Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03419 ATGAATCAAGAGCTTATATCATTTGACAACTGCAAGACGTCAATATTTGCCCTCCACAAACATTGTCAGACATGCGAATGTGACTTTTGTCTCGCCTGTTGTCATGACTTTTGTGATGCACAGCTTCGAGATGGTGCTGATCCAATTGAGTCACGTGTTACTGCCAAGCCTGGGGTTCACAAACACCCAAGATCTGATAGGCATGAGGATAGTGATGACAGAGTTTGCTGTGATGGGTTTCTTGAACTGAAAAGCTTCTATCCTCCAAGTCACATTGCTGATTTGGTAGATGAAGCAGAAAAACTTGTAGAAAAATACAAGCATTACAAGCCTATGATTGCAGACAAAACTCATAAGAACTTGCATTCATGTTTGAATCGCAAGGCAGCATCTCGTGAAGAGTCAAGCGACAACGATATATATTGCCCAAAGGGTAAAAATGTACATCCTAAGGATTTACAACATTTTCAATGGCACTGGAGGAAAGGGGAGCCAGTAATTGTCGGGAACGTGCTTGGAGGTGCGTCTAATTCATTATGGGAACCATCAGACATGAGCAGTGCAATCTGTCTGAAGCACAAAAAAGTGAAGGTCATTGATTGCTTAAGTTTGACCGAGAAAAATGTTACAACCAACATGTTCTTTACTGGGTACAATGAAGGTTGCAAGCGTTCAAGTGAACAACCTCACATGTTGAAGTTGAAAGATTGGCCTCCTTCTGAATCATTTAAAGAATGCTTACCTAATCATTTTGACGAGTTCGTATCTTACTTGCCGTATAAAGAATACACACATCCTGTAAGTGGTTCTCTTAACCTTGCCGTGAAGTTGCCTGATGGTTGTCTGAAGCCAGACATGGGGCCAAAAGCATACATTGCTTATGGATTTGCTAAGGAGCTTGGGCGTGGTGATTCTGTGACAAAGCTCCATTGTGACATGTCTGATGCAGTAAACGTGTTGACTCATGTTGCTAATGATGATGCCGTGTCTTCTGAGGATGGTGCTCTCTGGGATATTTTTCGAAGAAAGGATGTACCTATATTGGAGGAATATTTAAATAAGCAATTCAGAGAGTTTAATCATTTTAACTGCCTTCCTCTAACACAGGTTACTCACCCCATCCATGATCAGACCTTTTATCTGACTACGGAGCATAAGAAGAAACTTAAGGAGGAGTGTGGAATTGAGCCCTGGACCTTCACTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGATGTCCTCATCAAGTCAGAAATCTGAAATCATGCACCAAGGTTGCACTTGATTTTGTCTCACCGGAAAATGTTGGTGAGTGCTTTCGTTTGACAGAAGAGTTCCGCAAACTTCCGAAAAATCACGGGTCCAACTCAGACAAATTGCAGGTGAAGAAAATGGTTTTACATGCTGTGGATGATGCAGTCGAAAGGTTGAAAATTTCTACATCTGCTATTCCCACTAGTGGCTATCAGTACTATGAAGTTAAGGGAAAAAGGAAAGCATTTGATGAAGAGGTTGTTATTGACTTAGAAGATGAATATGAAGGTGACGGCGAAGGTGACAGTGAAGATGATAGTGAAGACGAGGAGTATGTTGCTAACGATGACAATGTAAGTGATGATTATACTGAAGATGATAGTGATTTTGAAGAGAGTTGGAATTGGGCTACCGTGTTGCCACAAGAAACAATTAACGAACAACACCATGGTTTTAGTGTTCCCTGGGTTCCTACTGACCCCGGGGAAAGTACTTTATTACCTCAGGTAATATGA 1773 0.4151 MNQELISFDNCKTSIFALHKHCQTCECDFCLACCHDFCDAQLRDGADPIESRVTAKPGVHKHPRSDRHEDSDDRVCCDGFLELKSFYPPSHIADLVDEAEKLVEKYKHYKPMIADKTHKNLHSCLNRKAASREESSDNDIYCPKGKNVHPKDLQHFQWHWRKGEPVIVGNVLGGASNSLWEPSDMSSAICLKHKKVKVIDCLSLTEKNVTTNMFFTGYNEGCKRSSEQPHMLKLKDWPPSESFKECLPNHFDEFVSYLPYKEYTHPVSGSLNLAVKLPDGCLKPDMGPKAYIAYGFAKELGRGDSVTKLHCDMSDAVNVLTHVANDDAVSSEDGALWDIFRRKDVPILEEYLNKQFREFNHFNCLPLTQVTHPIHDQTFYLTTEHKKKLKEECGIEPWTFTQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPKNHGSNSDKLQVKKMVLHAVDDAVERLKISTSAIPTSGYQYYEVKGKRKAFDEEVVIDLEDEYEGDGEGDSEDDSEDEEYVANDDNVSDDYTEDDSDFEESWNWATVLPQETINEQHHGFSVPWVPTDPGESTLLPQVI 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03419 590 MobiDBLite consensus disorder prediction 511 549 - -
Trre11g03419 590 SMART cupin_9 247 448 IPR003347 -
Trre11g03419 590 SUPERFAMILY Clavaminate synthase-like 150 479 - -
Trre11g03419 590 ProSiteProfiles JmjC domain profile. 266 448 IPR003347 -
Trre11g03419 590 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3 480 IPR045109 GO:0032454|GO:0033169
Trre11g03419 590 MobiDBLite consensus disorder prediction 571 590 - -
Trre11g03419 590 Gene3D Cupin 137 457 - -
Trre11g03419 590 Pfam JmjC domain, hydroxylase 335 431 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03419 Trre-Chr11 46596015 46603191 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre11g03419 JmjC 2.2e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03419 K15601 - thj:104802301 497.278