Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03411 ATGGCGTTGAACAAGATCGAACGCGGTCATCAGATGTACCGTGATGGACTCTACAAAGAGGCGTTAGGGTTCTACACGGAAGCAATCGGTATGGCGAAGACGAATCCTCAGAAGATCGCTTTGCATAGTAATCGTGCTGCTTGTTTTCTTAAGCTTCATCATTTCAAGAAGGCAGCAGAAGAATGTACCTCGGTGCTTGAGCTTGATAGCAATCACAGTGGAGCATTGATGTTGCGAGCTCAAACACTAGTGACTTTGAAGGAGTACCATTCAGCACTTTTTGATGTCAACAGACTCTTGGAGTTGAATCCATCATCCGAGGTCTATCAAAATCTTCATGCTCGCCTGAAGACACAGTTGTCACTTGCTCCAATACCAGAGTCAGAAGAGGAGTTTGAGGAACAGGAAGACGAGAAGGCTGAGGTGATGCAAAGAAGAGAAGACAAGAAGGAAGAAATTCGACAGGTACATGTGGCAGCTTCTACTGTTAGGACAGTTCAAAAGGGTGAGCTTGGTAAAGGTGTTATTAGCTATGAATGTGCTTCTAAAGAAATAGACCCCAAGTTTTCATTCAAACATGGAAGAGAGCTAAACAATGAGCCTAAAAAGTCGACGACAGAGCATGTAGTTCCTAAAGCAGAAAACAGGGAATCAGCCGAGCAACAATCCAAAGGATGGCAAACAATTCCAAAACCAAAAGGGCATTCAGCCCTGGACTATGCACGGTGGGACAGTGTTGACGATGATTCTAGTGAAGATGATGAAGAAGATGAAGACGATGAATCTTTGCCCCAGTACCGTTTTCGTGTGAAAACAGTTGGTGTACGTCCTGTGAAATGA 840 0.4429 MALNKIERGHQMYRDGLYKEALGFYTEAIGMAKTNPQKIALHSNRAACFLKLHHFKKAAEECTSVLELDSNHSGALMLRAQTLVTLKEYHSALFDVNRLLELNPSSEVYQNLHARLKTQLSLAPIPESEEEFEEQEDEKAEVMQRREDKKEEIRQVHVAASTVRTVQKGELGKGVISYECASKEIDPKFSFKHGRELNNEPKKSTTEHVVPKAENRESAEQQSKGWQTIPKPKGHSALDYARWDSVDDDSSEDDEEDEDDESLPQYRFRVKTVGVRPVK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03411 279 MobiDBLite consensus disorder prediction 246 261 - -
Trre11g03411 279 MobiDBLite consensus disorder prediction 193 279 - -
Trre11g03411 279 SMART tpr_5 73 106 IPR019734 GO:0005515
Trre11g03411 279 SMART tpr_5 2 35 IPR019734 GO:0005515
Trre11g03411 279 SMART tpr_5 39 72 IPR019734 GO:0005515
Trre11g03411 279 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 2 279 - -
Trre11g03411 279 SUPERFAMILY TPR-like 6 119 IPR011990 GO:0005515
Trre11g03411 279 Gene3D Tetratricopeptide repeat domain 1 155 IPR011990 GO:0005515
Trre11g03411 279 MobiDBLite consensus disorder prediction 193 219 - -
Trre11g03411 279 Coils Coil 125 152 - -
Trre11g03411 279 MobiDBLite consensus disorder prediction 126 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03411 Trre-Chr11 46447962 46452734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03411 2 120 Calmodulin-binding Proteins AT3G25230 32.824 4.55e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03411 - - gmx:100801778 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03411 11 46447962 46452734 Trre11g03411 11 46447962 46452734 ECH