Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03395 ATGGGAAAAGGAAGAGCACCATGCTGTGATAAGAGTCAAGTGAAGAGAGGACCTTGGAGCCCTGCTGAAGATCTTAAGCTTATTGCTTTTGTTCAGAAATTTGGTCATGAAAATTGGAGATCTCTCCCTAAACAAGCAGGTCTTCAGCGGTGTGGGAAAAGCTGTCGTTTGAGATGGATAAATTATCTTAGGCCTGATTTAAAGAGAGGCAATTTTACAGTGGAGGAAGAGGATACCATAATACGGCTACATAAGGCCTTTGGAAACAAATGGTCAAAGATTGCATCATATTTGCCTGGTAGAACTGATAATGAGATCAAGAATGTGTGGAACACACATTTAAAGAAAAAACTTATTGTAAAAAATTCAGAGTCAACAAGTGGAGATGAATCCAAGTTAGAATCATCAATAACTTCACCTTCTTCATCAGAATCATTTTTATCAAATGAGGTACCAATAAAAGATTCTGAAAAACAAGTATCCAACAATGATGAACTTGTTATCAACAATGAGGTACCAAAAGGGTCATCATCAAATTCATTATCATCTTCAATTGAGTCAAATATATTGAACTCAAGTCAAATTATTGATAAAAAATTGCTTGAAAAAGAATTGGCTTCTTTAGGAACTTTTGATATTGACAATATATTAGAAGAGATGGAAAATACAAATGATTTAATTGAAATACCATGGGAATCAGATTATGATCTTTGGAATTTTATTGACAATATTGGAGCTTATAATCAATTAAATGTTGGTGAAGAAAATGTTCAAAATGTTGTTGAAGCAAAAAAGTGGTCACATGATGAATTTGAGAATGAGTTTGGAGCATTAGGTGAAAAAAAGGAGTCAAACAAGAAGGATGAGGTCCTACCAAAGAATTGTGATGTTGAGCAAGAAATTCCTCATGAGGCATTTGATTTCAATGATATTATAATGTCTGATTCTGAATTAGACTTTGGTAATATTCAATTGTGGCCTTCTTGGCCTCAAAATAGTAGTCCTAAAGTTTAA 1014 0.3353 MGKGRAPCCDKSQVKRGPWSPAEDLKLIAFVQKFGHENWRSLPKQAGLQRCGKSCRLRWINYLRPDLKRGNFTVEEEDTIIRLHKAFGNKWSKIASYLPGRTDNEIKNVWNTHLKKKLIVKNSESTSGDESKLESSITSPSSSESFLSNEVPIKDSEKQVSNNDELVINNEVPKGSSSNSLSSSIESNILNSSQIIDKKLLEKELASLGTFDIDNILEEMENTNDLIEIPWESDYDLWNFIDNIGAYNQLNVGEENVQNVVEAKKWSHDEFENEFGALGEKKESNKKDEVLPKNCDVEQEIPHEAFDFNDIIMSDSELDFGNIQLWPSWPQNSSPKV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03395 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 228 - -
Trre11g03395 337 SMART sant 68 116 IPR001005 -
Trre11g03395 337 SMART sant 15 65 IPR001005 -
Trre11g03395 337 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Trre11g03395 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Trre11g03395 337 Gene3D - 16 68 - -
Trre11g03395 337 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Trre11g03395 337 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Trre11g03395 337 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Trre11g03395 337 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Trre11g03395 337 CDD SANT 71 114 IPR001005 -
Trre11g03395 337 Gene3D - 70 138 - -
Trre11g03395 337 CDD SANT 18 63 IPR001005 -
Trre11g03395 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Trre11g03395 337 FunFam Transcription factor RAX3 9 69 - -
Trre11g03395 337 MobiDBLite consensus disorder prediction 125 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03395 Trre-Chr11 46094980 46098469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03395 1 254 MYB Transcription Factor Family AT1G79180 47.751 4.07e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre11g03395 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03395 K09422 - gmx:100101836 397.127