Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03393 ATGTGCTCTGCTACTGCCACAACACCCTTCATTCGCCTCTGCAAACCCTTTCATTCTAGGGTTCCTACTTCCCTTACCTTCAATTCCACACGACCTACCTTCTTTGTTAGGGCTACGGTGGTAAAATGGCGATGTCCAAATCAAACTCTACCTCCCAACAGCAATACCGGTTTCCAAAAAAAGGCCTTGTATCTGGAATCTATCGGTATCGACTCTTTCTCACTTATTGAAAATCATCCAATGCTGATCACTGCCTCACTAGATGATATAAAATCCACCGTGGAATACATTACTGCTATGGATTTCTCTGCAATCGAGTTTCGACGTATGGTTCGCATGTGCCCAGAGATTCTTACCACCAAAGTCTCGGACATTATACCTGTCTTCATGTTTCTCCACCAAGAAGTTCGTGTAAGTGGCTCAAATATCAAGCATGTAATAAACCGTCGTCCTCGGTTGATTATATCCAACGTCGATAAGCAACTTCGTCCTACCATGTATTTCCTCCAAAGTATCATCGGCATAAACGATGTAAGCAAACACACCAATTTGCTATCATGTAGTGTCGAAGAAAAGTTTATACCCCGAATCGAATACTTTGAAAATATCGGATTCTCTAACCGCGATACAATTTCGATGTTTCGAAGATTTCCTCAGCTGTTTTGTTATAGTATTAAGAATAATTTGGAGCCAAAATACAATTACTTTGTGGTGGAGATGGGGAGAGATTTGAAGGAGGTGAAAGAATTTCCACAATATTTCTCATTTGGTTTAGAGAATAGGATTAAGCCTAGACATAAAAGGTGTGTAGAAATGGGTGTGTGTTTTCCACTTCCTTTATTATTAAAGACTAGTGAAGTGACATTTCAGAATAGATTAGAAACATTTGTAAATTCTTCAACACCCTTGAAAACATCTCCTCTGTGGTGTGCTGGTCATGATATTGATCAAGTATAG 957 0.396 MCSATATTPFIRLCKPFHSRVPTSLTFNSTRPTFFVRATVVKWRCPNQTLPPNSNTGFQKKALYLESIGIDSFSLIENHPMLITASLDDIKSTVEYITAMDFSAIEFRRMVRMCPEILTTKVSDIIPVFMFLHQEVRVSGSNIKHVINRRPRLIISNVDKQLRPTMYFLQSIIGINDVSKHTNLLSCSVEEKFIPRIEYFENIGFSNRDTISMFRRFPQLFCYSIKNNLEPKYNYFVVEMGRDLKEVKEFPQYFSFGLENRIKPRHKRCVEMGVCFPLPLLLKTSEVTFQNRLETFVNSSTPLKTSPLWCAGHDIDQV 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03393 318 Gene3D Transcription termination factor 3, mitochondrial 125 299 IPR038538 -
Trre11g03393 318 SMART mt_12 177 206 IPR003690 GO:0003690|GO:0006355
Trre11g03393 318 SMART mt_12 244 275 IPR003690 GO:0003690|GO:0006355
Trre11g03393 318 SMART mt_12 73 103 IPR003690 GO:0003690|GO:0006355
Trre11g03393 318 SMART mt_12 108 139 IPR003690 GO:0003690|GO:0006355
Trre11g03393 318 SMART mt_12 211 243 IPR003690 GO:0003690|GO:0006355
Trre11g03393 318 SMART mt_12 144 176 IPR003690 GO:0003690|GO:0006355
Trre11g03393 318 PANTHER CGI-12 PROTEIN-RELATED 72 298 IPR003690 GO:0003690|GO:0006355
Trre11g03393 318 FunFam Transcription termination factor MTEF1, chloroplastic 132 297 - -
Trre11g03393 318 Pfam mTERF 55 137 IPR003690 GO:0003690|GO:0006355
Trre11g03393 318 Pfam mTERF 134 290 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03393 Trre-Chr11 46054215 46059277 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre11g03393 mTERF 3.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03393 K15032 - gmx:100794678 501.901