Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03384 ATGGAACATTTATGTGATGATAACCTTGAAGGATCTAATGAAGAACGACAGATTTTTACAGAGGTCTTTTTTGGTGATGATACTTTTCAGTCTAGTCAGAGGTGTGTTGTTTCTGGAGCCATCAACCTTGAACATGAATCCACTAAAAACACATTTAAATCAGTTGGCTCTAGTAATGAAAACTCGGTCATATTACGTCTCTCGTCTTCCAGATTTACACATCCTGAGGAGGACATTGATCTAATTCAGCATTCCAATGAAACTGCTCTGGGGTGTTTGCCAGAGAGTTTAACTTGTGAAGACCAGAATGATGAGAATGTAAATGTCAAACGTATGAAGTTTTCTCTGCATGAACTTCCTTGTAGTAGATCTAATTCAGAAGATGTTTTGGGTTCATCTGGAATTCAAAAAGCAGTAATTTCCAACCTGCCGTGTGCTGCTACGAACTGTGATACTGACCCAATTGCATTTTGTACGGTTGAATCATCTAAACAGGGTGTGATATCTAGTTGCTGTCTATTGAAGCATAACTTGGTACATAATAAACATGCTTCTAATAATGACGTAGATGTTACAAATTGTAAATTTAAAACAGCAGATGGGAACATTGTAAAAGAGATCTCTGTAACTAAGGTAGTTGCTTCTCCTGTATCCCAGGAGAGTTCGGCAAACAGGCTAGTTGTAACGAGTCCATCAAACACTGTTGTGAAGAAGTCCGAGTCTCCTTTAAGAACTGAGGAAATTCCGGAAGAGTTTCAATCTTCTAATATGGTTATCTCAAAATCATTGTCAAAGCCAGGCAAAGAGGATCCCCGTCCCTTACTTCAGTTTCATATTGTGCAGATGCTTACGATGTTAGGATGGTCTATTGGGAAGCATCTACGGCCTTGTAGGCGGTGGATGGAATCAGTCTACACAACACCAACCGGAAAAACTATTCGGGAATTTACAAAAGTTTGGAGGTTATGTGGCCAACAGTTGTCTGTTGAAAAATACAATATACCATATGGAGGCCGTAAGGAATGGACTGATATTAGGGATTTCTGGTCTGATCTTTCGAGTGCACTGACAAATGTTGAAAAATCAAAAACCCAGCAGCCAGAAACCGCTGATATGTTGGCCTATCAATGGTGGCTTTTAGATCCTTTTGTAGTAGTTATATATTTTGATAGAAAGATCGGTGCTCTGAAAAGGGGAGAGCTAATAATAAAAGCATCGTGTAGTTTATTTTATAAGAAGTATAAAATGGCATATGCTCCAGTTGATTCAGCATGCGAGGACAGTTCTCGTGCTCATTCTGATCCAAAGCACGACCAAGCCATTTTCTGCGACTCTTCAACAGCCACCAGAACCACAGAAACATCTGCTTTTGTAATAAACAATCTTGTCTGTAATCAGAAATCTGATGGTATTCAAGAAGATGTGTATATTGGAGAACATAAACCAAACGTCATAGAAAACCGTTGCAGTGATATGTCAGTGGGCAGAAGTAGTATGGATCTAGTCTCCTTACCTGCTTGTGCATTGGGTAGCACCATTACCCAATCCAGTGCTTCCTCATTCAATGTTCTTACAAGCTCTGGAAATTTGGACTTGGAATCTAAAGTGAATGCTGTTCATCAGAAAACCTTTGATAAGCACACATCAGAAAATCAGTCTGAATGCAGTGAGGAAGAAGGGAGGAAGATCTCAATGGCTTCTGTATTTGGGAAAGATAGTACATGGTCCTCCTATGATGGTGGTATTCTTAAAAAGAAAATGCGGAGGAAGTGCAAAAGGATATCTCAAATCAAACCGAGTATGTTATACCATAGTGACATACTGGGATCAACTATTACTGACCAGGTGCAGCCGCTGAATGGTGATGCATGTGGCACTCAGGCTGGCTTGGAAGAAGTTCAGGATTATGTAGTTGACAGTGTGGGAAAAAAAAGGAACCACAGGCAGTTGACGGGTAGTGCAAACAAGCAACATATTAGGAAAACAAACTACTCTATTACTGAAAAAAATAAGTCCAAAAGATGCCATATTGAAGATGACGATCTATTAGTGTCAGCAATATTCAAGAATAAGGACTTCAACCCAAAGAAAGTTCGATGTAATTCTAGAGCTAAATCCGGCAAATCAAGTGGTTTGAGAAAGCTTAAAAGCAATAAAGGCCGTTGCAGGTTGCTACCAAGGAACCCTTGTACTGGTGGCAAACACAATAAGGATGGGAAGAAGTGTTATCTTGGGGAAAGGACTCTCTTGTCCTGGTTGATTGATAATGGGGTCATATCTTTAAAAAATGTTATTCAGTACCGAAATCCTAAAGATAATTCTGTCACTAAGGATGGTAGGATCACCAAAGAGGGCATTGTTTGCAAGTGTTGTGGTAAGGTGTTTACATTGTCAGAGTTCAAGACTCATGCTGGGTTTACACTGAGTCGCCCTTGCTTGAATCTTTTCATGAAGTCTGGTGAGCCCTTTACACTTCGCCTCCTTCAAGCTTGGTCAGCTGAATACAAATCCCGGAAAAGTCAAAATCAAGCTGTGAATGTTGTTGATAATGACAGAAATGATGACTCGTGTGGGTTGTGTGGGGAGGGAGGTGAGCTGATATGTTGTGATAACTGTCCGTCTACTTATCACCTGGCTTGTTTGTCCACTCAGGAGATCCCTGATGGCAACTGGTACTGCACAAACTGCACTTGTCGGATTTGTGGTAATTTGGTCGTTGACAAAGAGGCTTCAGATACACATGATTCATTACAATGTTCACAATGCGAACATAGATATCACGAGAAATGCCTAGGAGAAGGAGATAAACAAGAAGGAGCAGTTTCAGAGACTTGGTTTTGTAGTCAGAGTTGTCAGGAGGTATACTCCAGTCTCCAATCTCAGGTAGGGCTAGTTAATCAAGTTGCTGATGGCTTCTCATGGACGCTTCTTAGATGCATACACGATGACCAAAAGGTTCATTCTGCTCAGTGGCTTGCCCTAAAGGCAGTATGCAATACAAAATTAGCTGTTGCACTTACCATCATGGAGGAGTGTTTTGTGTCAATGTTAGATCTAAGAACAGGCATCCACATGTTACCCCAAGTTTTATACAATTGGGGGTCTGATTTTGCTCGTCTGAATTTTCAAGGGTTTTACACTGTGGTGCTGGAGAAACAGGATGTATTAATATCTGTAGCATCTATCAGAGTGCATGGGACTTCAGTTGCAGAGATGCCTCTAATTGCAACTTGCAGTCGGTATCGCCGCCAAGGAATGTGCCGACGCCTTGTGAGCTCAATCGAAGAGATGTTAATGTCTGTCAAGGTAGAAAAGCTTGTGGTATCCGCCATTCCCGATCTGGTGGAAACATGGACCAAGGGCTTTGGTTTTGTACCTGTAGGTGACATTGAAAAGCGGAGATTAAAAAAACTCAACTTAATGGTTTTTCCTGGAACAGTGTTACTTGAAAAATCCTTGTATGGCAAGAAGAAAAATGAAGGGCTGTGTGATCAATCAACTTTAGCAACAGATGACTCGTTCAAAGTAGATATCTGTTCCAAAGAAATGGCAATAGCCGAATCATTGCCGCAAGATGCTGGGAATGTGACTGCCATTGAAGTTGGTGCTAAGTCAGAGTATGAACCTATCGACTGCAAAAATCAACTAGACAATAAGGCTGATTGTGAAACCAGCAGAGATGATAATACTCAAGCTGTTGAAATTGCTTTAGGAGGCAAAGAATCAACAGAGACATGTAGGTATTTCGGTGAAGGGGAAATCACCCCTTTTGAAGGAGACAATGTGCAGGAATTGAGAATATGCAACAACATGCAAATTGAGAACTCTTGTGCCAACAAAGATGGTACTGAATCAGGTGTAAGACTTGTTGAGGACAATAATATCGAAATAGGTGAAGTTGAGGAAAATGCTTTGCACGGACATGTTTCAAATGCACCGTGCAAAACTTTTTCGGGCAACAATTTTGATGCAGTTTCTAATTTTGAATGCTCAGTGATGTATGATGAAACATCTATTTTTGGAACATTAGCAAACTCTGCAAAATCAATGGAAAGTTGA 4059 0.406 MEHLCDDNLEGSNEERQIFTEVFFGDDTFQSSQRCVVSGAINLEHESTKNTFKSVGSSNENSVILRLSSSRFTHPEEDIDLIQHSNETALGCLPESLTCEDQNDENVNVKRMKFSLHELPCSRSNSEDVLGSSGIQKAVISNLPCAATNCDTDPIAFCTVESSKQGVISSCCLLKHNLVHNKHASNNDVDVTNCKFKTADGNIVKEISVTKVVASPVSQESSANRLVVTSPSNTVVKKSESPLRTEEIPEEFQSSNMVISKSLSKPGKEDPRPLLQFHIVQMLTMLGWSIGKHLRPCRRWMESVYTTPTGKTIREFTKVWRLCGQQLSVEKYNIPYGGRKEWTDIRDFWSDLSSALTNVEKSKTQQPETADMLAYQWWLLDPFVVVIYFDRKIGALKRGELIIKASCSLFYKKYKMAYAPVDSACEDSSRAHSDPKHDQAIFCDSSTATRTTETSAFVINNLVCNQKSDGIQEDVYIGEHKPNVIENRCSDMSVGRSSMDLVSLPACALGSTITQSSASSFNVLTSSGNLDLESKVNAVHQKTFDKHTSENQSECSEEEGRKISMASVFGKDSTWSSYDGGILKKKMRRKCKRISQIKPSMLYHSDILGSTITDQVQPLNGDACGTQAGLEEVQDYVVDSVGKKRNHRQLTGSANKQHIRKTNYSITEKNKSKRCHIEDDDLLVSAIFKNKDFNPKKVRCNSRAKSGKSSGLRKLKSNKGRCRLLPRNPCTGGKHNKDGKKCYLGERTLLSWLIDNGVISLKNVIQYRNPKDNSVTKDGRITKEGIVCKCCGKVFTLSEFKTHAGFTLSRPCLNLFMKSGEPFTLRLLQAWSAEYKSRKSQNQAVNVVDNDRNDDSCGLCGEGGELICCDNCPSTYHLACLSTQEIPDGNWYCTNCTCRICGNLVVDKEASDTHDSLQCSQCEHRYHEKCLGEGDKQEGAVSETWFCSQSCQEVYSSLQSQVGLVNQVADGFSWTLLRCIHDDQKVHSAQWLALKAVCNTKLAVALTIMEECFVSMLDLRTGIHMLPQVLYNWGSDFARLNFQGFYTVVLEKQDVLISVASIRVHGTSVAEMPLIATCSRYRRQGMCRRLVSSIEEMLMSVKVEKLVVSAIPDLVETWTKGFGFVPVGDIEKRRLKKLNLMVFPGTVLLEKSLYGKKKNEGLCDQSTLATDDSFKVDICSKEMAIAESLPQDAGNVTAIEVGAKSEYEPIDCKNQLDNKADCETSRDDNTQAVEIALGGKESTETCRYFGEGEITPFEGDNVQELRICNNMQIENSCANKDGTESGVRLVEDNNIEIGEVEENALHGHVSNAPCKTFSGNNFDAVSNFECSVMYDETSIFGTLANSAKSMES 1352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03384 1352 CDD PHD_SF 897 949 - -
Trre11g03384 1352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 899 956 IPR013083 -
Trre11g03384 1352 SUPERFAMILY FYVE/PHD zinc finger 842 897 IPR011011 -
Trre11g03384 1352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 846 898 IPR013083 -
Trre11g03384 1352 Pfam PHD-finger 857 898 IPR019787 -
Trre11g03384 1352 SMART PHD_3 856 897 IPR001965 -
Trre11g03384 1352 SMART PHD_3 898 952 IPR001965 -
Trre11g03384 1352 PANTHER PHD FINGER FAMILY PROTEIN 5 1237 - -
Trre11g03384 1352 SUPERFAMILY FYVE/PHD zinc finger 897 948 IPR011011 -
Trre11g03384 1352 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1005 1130 IPR016181 -
Trre11g03384 1352 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1004 1154 IPR000182 GO:0016747
Trre11g03384 1352 ProSiteProfiles Zinc finger PHD-type profile. 854 899 IPR019787 -
Trre11g03384 1352 Gene3D - 1000 1138 - -
Trre11g03384 1352 CDD PHD2_CHD_II 856 896 - -
Trre11g03384 1352 Pfam Tify domain binding domain 779 824 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03384 Trre-Chr11 45924775 45933606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03384 1 399 PHD Transcription Factor Family AT3G14980 32.419 5.45e-42 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre11g03384 TDBD 6.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03384 - - mtr:25487250 2195.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03384 11 45924775 45933606 Trre11g03384 11 45924775 45933606 ECH