Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03377 ATGCACACAAACACAACAATGGGATCATCTTTCAATCCCATCTCATGCAACAGAAAAACTTCATACAGATTAGAAACCAAAAACTTATCATACAGATTGTGCAGCCAACTTGATGAATTTAGAAATCTTTGTTTCGGTTTGATTCCTCGGAGAGGTTCAAAGTTCATTTTGAAGGATGTAAATTGTGAGGCAAGGCCGGGGGAGGTTACTGCTATTGCTGGTCCTAGTGGAGCTGGAAAAACAACACTGCTTGAAATTCTTGCCGGGAGAATACCCTCATGTAAAGTTTCGGGACAGGTACTTGTCAATAACATGCCTATGGATGTAAATAGATTCAGAAGAGAATCCGGGTACGTCACGCAAGAAGATGCCTTGTTTCCATCGCTTACGGTTCGAGAGACGCTCATGTATAGTGCTTTGTTGAGGCTTCCCGGGGGGCGAAAAGCGGCTGCTATGAGAGTTGCAGAGTTGATGAAGGAGCTCGGGTTGGATACCATTGCAGATTCAAGAATTGGCAATGGATCAGACCATGGTATATCGGGCGGGGAAAGGCGTAGAGTTTCCATTGGTGTTGACTTGGTTCATGACCCTGCAATTATTTTGATTGATGAACCAACTTCAGGCTTGGATTCAGCATCAGCTCTTAAAGTAATCTCATTGCTTAGATTAATGGCATTTAATCAAGGTAAGACAGTTGTTTTAACTATCCATCAACCCGGTTTCCGAATCCTAGAGCTACTTGATAGCCTCATTTTGCTGTCTGATGGATTTGTCACACATAACGGTTCATTGAATCTGCTCGAGGCAAGGCTCAATTTATCCGGTCATCGCATTCCCAACCATGTCAATGTCCTAGAATTTGCTCTTGATGCCATGCAAACCTTGGTTATACATACTTCGGAATCTGGGAACAATCAATTTCTTCTCAATGACAAAAATCACCAAGATCACAAGACAATGATGCAATGCTCTATGATTGTCAAAGAAAAGGCAATTTCATACTCAAATTCTCCAATGGAAGAGATTTTAATCCTAGGACAAAGATTTTGCAGCAACATATTCAGAACCAAGCAACTCTTTGTTACAAGGGTCATACAGGCCTTAGTAGCTGGATTTGTATTGGGGACCATATTCTTGAATGTTGGCAACAAACAAAGTAAAATAGCATTACAAACGCGAAGTGGCTTCTTCGCTTTCAGCCTTACCTTTTTGTTATCATCAACAACAGAAGGGTTGCCTATTTTCTTGGAGGAAAGAAGAACTTTTATGAGAGAGACCTCAAGAGGAGCTTATAGAGTTTCTTCATATGTTTTAGCAAATACACTTGTGTTTCTTCCTTTTCTTCTAATGGTTGGTCTTCTATATACTACTCCAGTTTATTGGCTGGTAGGATTAAGGAAAGACATTGATGGTTTCCTTTACTTCTCCTTAGTGGTTTGGTTGGTCTTATTAATGTCGAATTCTCTCGTGGCTTGTTTCAGCGCCCTAGTGCCGAATTTCATTCTTGGAAGCTCGGTGATTGCCGGTCTAATGGGGTCTTTCTTTCTATTCTCAGGGTATTTCATATCAAAGGAAAAAATACCTAGTTACTGGATTTTTATGCACTACATAAGTCTATTCAAGTATCCATTTGAGTGCCTTATGATAAATGAGTATGGAGGCGAGCAAGGGAAAAGGAGATGCATAGAGGTTGACGACAACGGTGAATGCATATTATATGGAGTTGAGTTCTTAAGACAACAGGGTCTCAAAGAGTCACACAAGTGGATCAATTTGGCTTTAATGTTAAGCTTCATAATAGGGTATAGAGTGCTTAACTTTATAATTCTTTGGTCTAGATGTTACAAAAGTAGAAAATAA 1860 0.4005 MHTNTTMGSSFNPISCNRKTSYRLETKNLSYRLCSQLDEFRNLCFGLIPRRGSKFILKDVNCEARPGEVTAIAGPSGAGKTTLLEILAGRIPSCKVSGQVLVNNMPMDVNRFRRESGYVTQEDALFPSLTVRETLMYSALLRLPGGRKAAAMRVAELMKELGLDTIADSRIGNGSDHGISGGERRRVSIGVDLVHDPAIILIDEPTSGLDSASALKVISLLRLMAFNQGKTVVLTIHQPGFRILELLDSLILLSDGFVTHNGSLNLLEARLNLSGHRIPNHVNVLEFALDAMQTLVIHTSESGNNQFLLNDKNHQDHKTMMQCSMIVKEKAISYSNSPMEEILILGQRFCSNIFRTKQLFVTRVIQALVAGFVLGTIFLNVGNKQSKIALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTFMRETSRGAYRVSSYVLANTLVFLPFLLMVGLLYTTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGSSVIAGLMGSFFLFSGYFISKEKIPSYWIFMHYISLFKYPFECLMINEYGGEQGKRRCIEVDDNGECILYGVEFLRQQGLKESHKWINLALMLSFIIGYRVLNFIILWSRCYKSRK 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03377 619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 24 280 IPR003439 GO:0005524
Trre11g03377 619 SMART AAA_5 66 257 IPR003593 GO:0016887
Trre11g03377 619 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 21 604 - -
Trre11g03377 619 FunFam ABC transporter G family member 10 41 286 - -
Trre11g03377 619 Pfam ABC-2 type transporter 341 552 IPR013525 GO:0016020|GO:0140359
Trre11g03377 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 270 IPR027417 -
Trre11g03377 619 CDD ABCG_EPDR 39 239 - -
Trre11g03377 619 Gene3D - 31 281 IPR027417 -
Trre11g03377 619 ProSitePatterns ABC transporters family signature. 179 193 IPR017871 GO:0005524|GO:0016887
Trre11g03377 619 Pfam ABC transporter 57 207 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03377 Trre-Chr11 45850312 45852171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03377 37 267 Calmodulin-binding Proteins AT2G36910 29.412 2.30e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03377 K05681 - gmx:100776372 1026.54