Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03367 ATGAACGGTGGAGAGATAGTGGAAGTTGACGGTGGTCACATTATAAGGTCAAGAGGTAGAAAAGATCGTCATAGTAAAGTTTGCACGGCGAAAGGGCCGAGAGATAGACGTGTCCGTCTCTCGGCCCATACCGCCATTGAATTTTATGATGTTCAAGATCGATTGGGCTTTGATAGGCCCAGTAAAGCCCTTGATTGGCTCATTAATAAAGCTAAGCCCGCCATCGATCAACTCGATCAACTTCCTCCATGGAAACCAACTCTTGTAACTAAACAACAACAACCACAACAACAAAACGACAACGTTTCGGAGAAACTGATTGGTAACGGAAATGAAAACGAGCTTCGTTTTCTTCAGAATTTGAACAGCAATAGCAACGGTTTTGTTCCGTTTGAAAGTGAAATTGGTGAAACGACGTCGTCTTCGCCGATTCACTTTCCTGATTTGCTTTCGAGAACGAATAGTAATGATTTGAGACTTTCGTTGCAACAGAATCAGCACGTGCAACCGCACGTGCTTTTCGCCGGAAATTTTGATGGAATGGTAGCGTGGAATTCCGGTGGCGGTGCTGCTGCTATTGATACCGGTAGTAGCGGTGGTGGTGGTAGTAATAATGATGATGCTTCAGGTGGAGGTTTTGTGTTTCATACTCCTTCACCGTCGCCGGTGGTTTTTCCGGCGGTGATGTATGGTCAGAATCAGTATCTTTCTCAGAGGGGACCCCTTCAGTCCAGTTACAATCCTTCATTTCGTGCTTGGATCGATGCGCCGACGTTTGTTGCTGCTGATTATCAACGTCAGGCGGTTGCTTTGGGTGCCGGATTTGCTTCTGGTGGCTTTTCTGGTTTCCGTGTGCCGGCACGAATTGGAGGTGATGATGATGAGGTGCATGGTGGTTTATCTGACAGGCCGTCGTCTGCTTCCTCAGATTCTCGCCGTTGA 942 0.4713 MNGGEIVEVDGGHIIRSRGRKDRHSKVCTAKGPRDRRVRLSAHTAIEFYDVQDRLGFDRPSKALDWLINKAKPAIDQLDQLPPWKPTLVTKQQQPQQQNDNVSEKLIGNGNENELRFLQNLNSNSNGFVPFESEIGETTSSSPIHFPDLLSRTNSNDLRLSLQQNQHVQPHVLFAGNFDGMVAWNSGGGAAAIDTGSSGGGGSNNDDASGGGFVFHTPSPSPVVFPAVMYGQNQYLSQRGPLQSSYNPSFRAWIDAPTFVAADYQRQAVALGAGFASGGFSGFRVPARIGGDDDEVHGGLSDRPSSASSDSRR 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03367 313 ProSiteProfiles TCP domain profile. 20 78 IPR017887 -
Trre11g03367 313 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 243 IPR005333 GO:0003700
Trre11g03367 313 MobiDBLite consensus disorder prediction 1 27 - -
Trre11g03367 313 MobiDBLite consensus disorder prediction 291 313 - -
Trre11g03367 313 Pfam TCP family transcription factor 19 109 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03367 Trre-Chr11 45737186 45738127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03367 4 312 TCP Transcription Factor Family AT3G15030 42.680 9.43e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre11g03367 TCP 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03367 - - tpra:123895106 491.115