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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Trre11g03359
ATGGCGAAAACAAGGCCAGGAAAGAAAGACATAGATTCATACACCATCAGAGGAACAAACAAGATTGTTAAAGCTGGTGATTGTGTTTTGATGCGTCCTTCTGACACGAGTAAGCCACCATATGTGGCACGTGTGGAGAAGATCGAGCAAGATAATAGGAACAATGTGAGGGTTCGTGTGAGATGGTATTATAGACCTGAAGAATCTATTGGTGGAAGAAGACAGTTTCATGGTGCTAAGGAACTGTTTTTATCTGACCATTATGATGTTCAAAGTGCTCACACTATTGAAGGAAAATGTATTGTCCATTCTTTCAAGAACTATACTAAGCTTGAGAATGTAGGTTCTGAAGATTACTATTGTAGGTTTGAGTATAAGGCTGCTACCGGCGCATTCACTCCTGACCGTGTTGCTGTATACTGCAAATGCGAGATGCCTTATAATCCAGATGACCTAATGGTGCAGTGTGAGGGATGCAAGGATTGGTACCATCCTGCTTGTGTGGGCATGACTATTGAAGAAGCGAAGAAATTGGACCATTTTGTTTGTTCTGAATGTTCATCTGACGATGATTTGAAGAAACCACCTGCTGTGTTTCCAGTATCACCGGGATCTGATGGCAAGGTGGAGCCAAAGCGGCGAAAGAGAGGACCGTGA
657
0.4292
MAKTRPGKKDIDSYTIRGTNKIVKAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGSEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDLKKPPAVFPVSPGSDGKVEPKRRKRGP
218
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Trre11g03359
218
ProSiteProfiles
Zinc finger PHD-type profile.
138
189
IPR019787
-
Trre11g03359
218
Gene3D
Zinc/RING finger domain, C3HC4 (zinc finger)
133
197
IPR013083
-
Trre11g03359
218
ProSiteProfiles
BAH domain profile.
21
136
IPR001025
GO:0003682
Trre11g03359
218
Pfam
BAH domain
23
135
IPR001025
GO:0003682
Trre11g03359
218
SMART
PHD_3
140
187
IPR001965
-
Trre11g03359
218
PANTHER
OS08G0421900 PROTEIN
1
208
-
-
Trre11g03359
218
SMART
BAH_4
21
136
IPR001025
GO:0003682
Trre11g03359
218
ProSitePatterns
Zinc finger PHD-type signature.
141
186
IPR019786
-
Trre11g03359
218
SUPERFAMILY
FYVE/PHD zinc finger
132
190
IPR011011
-
Trre11g03359
218
Gene3D
-
2
132
IPR043151
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Trre11g03359
Trre-Chr11
45602225
45605435
Dispersed/Wgd
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Trre11g03359
31
132
Core DNA Replication Machinery Family
AT4G14700
29.126
1.16e-10
58.9
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TR
PHD
Trre11g03359
BAH
4.1e-24
No_clan
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Trre11g03359
K25868
-
gmx:100800993
437.958
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