Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03357 ATGGCACAGTTACCTCCTAAAATACCAACCATGCCCCAAAATTGGCCATATTCTCCTCACCAAAAGGTATCATCATCATCCACAATGTCAAATATCACCTCCACGACCACCACCACGACCACAACTACGACTCTGAATAATACATCTGACCAACAATTACCATCATGGATCGACGAATTCCTCGACTTCTCCTCGGTAAGACGAGGGGCTCACCGACGTTCTGCCAGTGACTCAATTGCCTTCCTCGAGACATCTTTTCTCGAGGAAGACTGCAAAAGTGGTGGTGGAGGAGGAGGTGGTGACTTTGATAGACTGGATGATGACCAATTTATTTCCATGTTCTCCGACAATGTTGCCGGCGTCTCTTTCCCGCCTCCACCATTGTCGTCAACCTCCAACCCATCATCGCCGTCCTCCGACCAAAATAGCAATAACAATGAAGAGAAACCAATGGCAATGGTGATGGATGCACCACCTCAGGAGCATTATCTTCATCATCATGGGGTGAAGCCTAAGGATGAAGCAATTGATGATGAAAATTCATGTAAAATGGAGGCGGCGGCGGGGCCATCGTCCGCCACAACCATCACCTGCACTGAAACCGTTGTTGATCCCAAGAGGGTCAAAAGAATTTTGGCTAACCGGCAATCAGCTCAGAGGTCAAGGGTGAGAAAGCTACAATACATTTCTGAGCTAGAAAGGAGTGTAACTTCTTTGCAGACAGAAGTTTCGGCATTATCTCCACGAGTTGCATTCTTGGACCATCAACGTTTGATTCTTAATGTCGACAACAGTGCCTTAAAGCAACGGATTGCAGCATTGGCCCAAGACAAGCTTTTCAAAGATGCTCATCAAGAAGCATTAAAGAAGGAAATAGAAAGGTTGAGGCAAATATATCACCAACAAAACATACAAAAGATGGGCAATTCAGTCAATAATAATAATAACAATGGTCATTCTCTTCAATCTCCACCAACATCACAACCACAACAACACACTTTCCATCAGCACAAGGAGCAACTCCTTAGTTAA 1032 0.4496 MAQLPPKIPTMPQNWPYSPHQKVSSSSTMSNITSTTTTTTTTTTLNNTSDQQLPSWIDEFLDFSSVRRGAHRRSASDSIAFLETSFLEEDCKSGGGGGGGDFDRLDDDQFISMFSDNVAGVSFPPPPLSSTSNPSSPSSDQNSNNNEEKPMAMVMDAPPQEHYLHHHGVKPKDEAIDDENSCKMEAAAGPSSATTITCTETVVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKLFKDAHQEALKKEIERLRQIYHQQNIQKMGNSVNNNNNNGHSLQSPPTSQPQQHTFHQHKEQLLS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03357 343 MobiDBLite consensus disorder prediction 307 343 - -
Trre11g03357 343 CDD bZIP_plant_RF2 207 257 IPR044759 GO:0003700|GO:0006355
Trre11g03357 343 Gene3D - 205 257 - -
Trre11g03357 343 MobiDBLite consensus disorder prediction 14 50 - -
Trre11g03357 343 MobiDBLite consensus disorder prediction 133 147 - -
Trre11g03357 343 SUPERFAMILY Leucine zipper domain 206 260 IPR046347 GO:0003700|GO:0006355
Trre11g03357 343 FunFam Basic leucine zipper 61 205 278 - -
Trre11g03357 343 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 204 256 IPR004827 GO:0003700|GO:0006355
Trre11g03357 343 SMART brlzneu 202 266 IPR004827 GO:0003700|GO:0006355
Trre11g03357 343 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 209 224 IPR004827 GO:0003700|GO:0006355
Trre11g03357 343 Coils Coil 285 305 - -
Trre11g03357 343 MobiDBLite consensus disorder prediction 117 147 - -
Trre11g03357 343 MobiDBLite consensus disorder prediction 1 50 - -
Trre11g03357 343 PANTHER BASIC LEUCINE ZIPPER 34 1 332 - -
Trre11g03357 343 Pfam bZIP transcription factor 206 251 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03357 Trre-Chr11 45572436 45575492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03357 1 284 bZIP Transcription Factor Family AT3G58120 51.290 1.58e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre11g03357 bZIP_1 1.5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03357 - - gmx:100820197 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03357 11 45572436 45575492 Trre11g03357 11 45572436 45575492 ECH