Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03349 ATGTTTTTCCCTGATATAATTCCGCTTGGTCATCCAATATTCGATATTATCAACTCAACAAATCCAGAGACAGATTGGGATTTAAGATTAGCACGCCTTCTCTTTGCAGATGAAAGTACTAGCTTACTTCTATCTACAGAGGAGGAACTTTTGGAGCTGCAGGATCCCGATCTTGCTTCTAAAGTGAGAATTCAGCAACAGCGAGCCTTAGAATTCTGGGAGAAGAATTGGCATATTGGTGTGCCTCTAAAAGTAAAACGTCTTGCTCGTGAACCAGAAAGGTTTATTTGGGCAGTAGGAATTGCACAATCACGATGTATCAATATGCAAATGAGAATGTGTGCACTAACTCAAGAGGCAAATATGTTGATTCCTTATGCCGATATGTTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGTGTTTTAAGGACAGGATGCTTGAGGTTCTTATAAATGCTGGACAACAGATTAGAAAGGGAGATGAGATGACAGTTGATTACATGAGTGCGCAGAAGAATGACATGTTAATGCTAAGATATGGATTTTCATTGCCAGTGAATCCTTGGGATGCGATAAAATTCTCAGGCAATGCACGAATCCATTTGGATTCATTCTTGTCAGTCTTCAACATATCTGGCCTACGTGAAGAGTATTATCGTAACGAAGTTCTATCAAACGCTGGAGATACTTTTGTTGATGGAGCGGTCATAGCTGCAGCACGAACATTGCCAACATGGTCAGACGGAGATGTTCCTCCAATCCCAAGTGAAGAAAGGAAGGCTGTGAAGGCATTACAACAAGAATGCAAAAAAATGCTCGCAGAATTTGCCACCACCTCTAAGCAAGACCAGAAATTATTAGATGCATCGCCAGAAGCTAGAAGAACTCTTGAAGCTGCAATAAAGTATAGATTGCACCGAAAATTGTTGATAGAGAAAGTTATCGTAGCATTGGAGATTTATCAAGAACAAATACTGTTTTGA 990 0.398 MFFPDIIPLGHPIFDIINSTNPETDWDLRLARLLFADESTSLLLSTEEELLELQDPDLASKVRIQQQRALEFWEKNWHIGVPLKVKRLAREPERFIWAVGIAQSRCINMQMRMCALTQEANMLIPYADMLNHSFEPNCFFHWCFKDRMLEVLINAGQQIRKGDEMTVDYMSAQKNDMLMLRYGFSLPVNPWDAIKFSGNARIHLDSFLSVFNISGLREEYYRNEVLSNAGDTFVDGAVIAAARTLPTWSDGDVPPIPSEERKAVKALQQECKKMLAEFATTSKQDQKLLDASPEARRTLEAAIKYRLHRKLLIEKVIVALEIYQEQILF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03349 329 Coils Coil 264 284 - -
Trre11g03349 329 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 8 299 - -
Trre11g03349 329 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 181 321 IPR036464 -
Trre11g03349 329 Pfam Rubisco LSMT substrate-binding 258 310 IPR015353 -
Trre11g03349 329 SUPERFAMILY SET domain 16 187 IPR046341 -
Trre11g03349 329 Pfam SET domain 42 169 IPR001214 GO:0005515
Trre11g03349 329 FunFam Plastid transcriptionally active 14 206 326 - -
Trre11g03349 329 Gene3D set domain protein methyltransferase, domain 1 17 184 - -
Trre11g03349 329 Gene3D - 204 327 IPR036464 -
Trre11g03349 329 CDD SET_LSMT 52 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03349 Trre-Chr11 45517268 45520932 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre11g03349 SET 5.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03349 - - tpra:123887006 583.178