Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03348 ATGTTTTTCCCTGATATAATTCCGCTTGGTCATCCAATATTCGATATTATCAACTCAACAAATCCAGAGACAGATTGGGATTTAAGATTAGCACGCCTTCTCTTTGCAGATGAAAGTACTAGCTTACTTCTATCTACAGAGGAGGAACTTTTGGAGCTGCAGGATCCCGATCTTGCTTCTAAAGTGAGAATTCAGCAACAGCGAGCCTTAGAATTCTGGGAGAAGAATTGGCATATTGGTGTGCCTCTAAAAGTAAAACGTCTTGCTCGTGAACCAGAAAGGTTTATTTGGGCAGTAGGAATTGCACAATCACGATGTATCAATATGCAAATGAGAATGTGTGCACTAACTCAAGAGGCAAATATGTTGATTCCTTATGCCGATATGTTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGTGTTTTAAGGACAGGATGCTTGAGGTTCTTATAAATGCTGGACAACAGATTAGAAAGGGAGATGAGATGACAGTTGATTACATGAGTGCGCAGAAGAATGACATGTTAATGCTAAGATATGGATTTTCATTGCCAGTGAATCCTTGGGATGCGATAAAATTCTCAGGCAATGCACGAATCCATTTGGATTCATTCTTGTCAGTCTTCAACATATCTGGCCTACGTGAAGAGTATTATCGTAACGCAGAAGTTCTATCAAACGCTGGAGATACTTTTGTTGATGGAGCGGTCATAGCTGCAGCACGAACATTGCCAACATGGTCAGACGGAGATGTTCCTCCAATCCCAAGTGAAGAAAGGAAGGCTGTGAAGGCATTACAACAAGAATGCAAAAAAATGCTCGCAGAATTTGCCACCACCTCTAAGCAAGACCAGAAATTATTAGATGCATCGCCAGAAGCTAGAAGAACTCTTGAAGCTGCAATAAAGTATAGATTGCACCGAAAATTGTTGATAGAGAAAGTTATCGTAGCATTGGAGATTTATCAAGAACAAATACTGTTTTGA 993 0.3988 MFFPDIIPLGHPIFDIINSTNPETDWDLRLARLLFADESTSLLLSTEEELLELQDPDLASKVRIQQQRALEFWEKNWHIGVPLKVKRLAREPERFIWAVGIAQSRCINMQMRMCALTQEANMLIPYADMLNHSFEPNCFFHWCFKDRMLEVLINAGQQIRKGDEMTVDYMSAQKNDMLMLRYGFSLPVNPWDAIKFSGNARIHLDSFLSVFNISGLREEYYRNAEVLSNAGDTFVDGAVIAAARTLPTWSDGDVPPIPSEERKAVKALQQECKKMLAEFATTSKQDQKLLDASPEARRTLEAAIKYRLHRKLLIEKVIVALEIYQEQILF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03348 330 SUPERFAMILY SET domain 16 187 IPR046341 -
Trre11g03348 330 Pfam Rubisco LSMT substrate-binding 259 311 IPR015353 -
Trre11g03348 330 Gene3D - 204 328 IPR036464 -
Trre11g03348 330 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 8 300 - -
Trre11g03348 330 Pfam SET domain 42 169 IPR001214 GO:0005515
Trre11g03348 330 Coils Coil 265 285 - -
Trre11g03348 330 Gene3D set domain protein methyltransferase, domain 1 17 184 - -
Trre11g03348 330 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 181 322 IPR036464 -
Trre11g03348 330 CDD SET_LSMT 52 184 - -
Trre11g03348 330 FunFam Plastid transcriptionally active 14 206 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03348 Trre-Chr11 45517268 45520932 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre11g03348 SET 5.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03348 - - tpra:123887006 578.556