Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03343 ATGCGCTCAGTGGTGACTGCTTCTGGGAATGCAACTAATGTTGATTCTCACTATTTACCAGATGCTTATGACAATGCTAGGGTGTATGGGATTGCACAATACAATGGCATGCAGCCTCAACATAATCTCGAGATGGGTGTTGCAACAGCAGGCAACATATATTATTCTGGCATGAATCCTTCTTCAAGTACCGGTGTTTTCCCTCCGCCTCATAGAGCCTCTGATCAGTTGCCAGGTTCAAGCACATTTGCAATCTCCGGTGTTTCCTTAGATAATTTTGGAAGAAGCGCTGGTTTCATGGATGACGCTAGGGGTCCGTACAAAAGGAAAGTTGCTGAAGGGATTAGAGGAAACCATCAACATTTTAATGCTTCAACTAGTTCTTCTATTGCTCCCCCGAATGCAAGACATGCTGATGGGGTAGCTATGATGGATACTGCACCATTGCCATTCCGCGTCCCTTCCCTCATTGGAGTAGGACCACATGGCGGTGCATGGAGCAGGTCAGGTGAGTCTATTATGGTGCATGACCATAATCATTTGATTCACGGAAACTATTTGGGGCAGCACTTTCCGCCAGCCGCTCCTCCTTGGCTGGACCAGCAAGTGAATACTAATAGCAATGATGGCCATACTGCAGCCTGGAATCCGTCTGTTCCAATGCCTTATATTCAAGCACCCAATATTAATGGAAGTTCATTAGAGAGTGCAAGTATGGGTTTGCAGAGGTATCATGACGCAGCCGGTAACCGCAATGTCCTGAGGTTTCCTCCTCCGCCTCCTCCTGTCAACCAACAGCACCCTAATTATCATCATCCAACACTTCCTATGCAAGGAATAAGAGGTCACAATATCAGCTTTCATCCTCCGGTTGCTGCAGCTTCATTTAGGGTTCCACCAAATCCTCCACGTGGTTCTGTGATCCCTCCACAGACTGGTTTTGAGGCAGGTCCTAGGCATATCATCCCTGCACCATCAACAGGCTTCCGGATTTATCGACCTCATAGGCTCATGCCGGAGACAGCTCTCGGACATCGAAGTCTACCTCCAGTGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTCGGAAATCTGATTGACCATCACCGGGATATGCGTTTGGACATAGAGGACATGTCATATGAGGATCTACTAGCATTAGGCGAGAGGATTGGCAGTGTGAACACTGGTTTATCCGAGGAAACAATTGCAAATCAACTAAAGACAAAAATTTATTCAACGAAAGCCACTGCTATCAATCTGGAGGAGGTAGCTTCTGATGATCAGGAAACTGATTCCTGCATAATTTGTCAGGATGATTTTAAGAATGAAGAGAAGATTGGGATTCTTCGATGCGAGCACGAATATCATGAGGATTGCTTAACGAAATGGTTGCTTGTGAAGAACGTGTGTCCGATATGCAAGTCAGAAGCATTGGCTCCTGGAAGGAACGACGCATAA 1470 0.4619 MRSVVTASGNATNVDSHYLPDAYDNARVYGIAQYNGMQPQHNLEMGVATAGNIYYSGMNPSSSTGVFPPPHRASDQLPGSSTFAISGVSLDNFGRSAGFMDDARGPYKRKVAEGIRGNHQHFNASTSSSIAPPNARHADGVAMMDTAPLPFRVPSLIGVGPHGGAWSRSGESIMVHDHNHLIHGNYLGQHFPPAAPPWLDQQVNTNSNDGHTAAWNPSVPMPYIQAPNINGSSLESASMGLQRYHDAAGNRNVLRFPPPPPPVNQQHPNYHHPTLPMQGIRGHNISFHPPVAAASFRVPPNPPRGSVIPPQTGFEAGPRHIIPAPSTGFRIYRPHRLMPETALGHRSLPPVGFLQVDDVALIDEVGNLIDHHRDMRLDIEDMSYEDLLALGERIGSVNTGLSEETIANQLKTKIYSTKATAINLEEVASDDQETDSCIICQDDFKNEEKIGILRCEHEYHEDCLTKWLLVKNVCPICKSEALAPGRNDA 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03343 489 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 73 482 IPR045191 GO:0061630
Trre11g03343 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 482 IPR013083 -
Trre11g03343 489 CDD RING-H2_RNF24-like 435 481 - -
Trre11g03343 489 SMART ring_2 437 477 IPR001841 -
Trre11g03343 489 Pfam Ring finger domain 435 478 IPR001841 -
Trre11g03343 489 ProSiteProfiles Zinc finger RING-type profile. 437 478 IPR001841 -
Trre11g03343 489 FunFam E3 ubiquitin ligase BIG BROTHER 397 482 - -
Trre11g03343 489 SUPERFAMILY RING/U-box 431 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03343 Trre-Chr11 45487654 45490078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03343 354 482 C3H Transcription Factor Family AT2G15530 44.444 1.25e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03343 K19041 - gmx:100800642 686.026