Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03342 ATGGATCAAATGACAGATTCGGATATGGATCAGCAGCGGCAAGGCTATTTTCATTCTGAACCGTGTGTTCTTTTGAGAGGCCCCAATGTTGGACATCCTAATATGCGCTCAGTGGTGACTGCTTCTGGGAATGCAACTAATGTTGATTCTCACTATTTACCAGATGCTTATGACAATGCTAGGGTGTATGGGATTGCACAATACAATGGCATGCAGCCTCAACATAATCTCGAGATGGGTGTTGCAACAGCAGGCAACATATATTATTCTGGCATGAATCCTTCTTCAAGTACCGGTGTTTTCCCTCCGCCTCATAGAGCCTCTGATCAGTTGCCAGGTTCAAGCACATTTGCAATCTCCGGTGTTTCCTTAGATAATTTTGGAAGAAGCGCTGGTTTCATGGATGACGCTAGGGGTCCGTACAAAAGGAAAGTTGCTGAAGGGATTAGAGGAAACCATCAACATTTTAATGCTTCAACTAGTTCTTCTATTGCTCCCCCGAATGCAAGACATGCTGATGGGGTAGCTATGATGGATACTGCACCATTGCCATTCCGCGTCCCTTCCCTCATTGGAGTAGGACCACATGGCGGTGCATGGAGCAGGTCAGGTGAGTCTATTATGGTGCATGACCATAATCATTTGATTCACGGAAACTATTTGGGGCAGCACTTTCCGCCAGCCGCTCCTCCTTGGCTGGACCAGCAAGTGAATACTAATAGCAATGATGGCCATACTGCAGCCTGGAATCCGTCTGTTCCAATGCCTTATATTCAAGCACCCAATATTAATGGAAGTTCATTAGAGAGTGCAAGTATGGGTTTGCAGAGGTATCATGACGCAGCCGGTAACCGCAATGTCCTGAGGTTTCCTCCTCCGCCTCCTCCTGTCAACCAACAGCACCCTAATTATCATCATCCAACACTTCCTATGCAAGGAATAAGAGGTCACAATATCAGCTTTCATCCTCCGGTTGCTGCAGCTTCATTTAGGGTTCCACCAAATCCTCCACGTGGTTCTGTGATCCCTCCACAGACTGGTTTTGAGGCAGGTCCTAGGCATATCATCCCTGCACCATCAACAGGCTTCCGGATTTATCGACCTCATAGGCTCATGCCGGAGACAGCTCTCGGACATCGAAGTCTACCTCCAGTGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTCGGAAATCTGATTGACCATCACCGGGATATGCGTTTGGACATAGAGGACATGTCATATGAGGATCTACTAGCATTAGGCGAGAGGATTGGCAGTGTGAACACTGGTTTATCCGAGGAAACAATTGCAAATCAACTAAAGACAAAAATTTATTCAACGAAAGCCACTGCTATCAATCTGGAGGAGGTAGCTTCTGATGATCAGGAAACTGATTCCTGCATAATTTGTCAGGATGATTTTAAGAATGAAGAGAAGATTGGGATTCTTCGATGCGAGCACGAATATCATGAGGATTGCTTAACGAAATGGTTGCTTGTGAAGAACGTGTGTCCGATATGCAAGTCAGAAGCATTGGCTCCTGGAAGGAACGACGCATAA 1572 0.4606 MDQMTDSDMDQQRQGYFHSEPCVLLRGPNVGHPNMRSVVTASGNATNVDSHYLPDAYDNARVYGIAQYNGMQPQHNLEMGVATAGNIYYSGMNPSSSTGVFPPPHRASDQLPGSSTFAISGVSLDNFGRSAGFMDDARGPYKRKVAEGIRGNHQHFNASTSSSIAPPNARHADGVAMMDTAPLPFRVPSLIGVGPHGGAWSRSGESIMVHDHNHLIHGNYLGQHFPPAAPPWLDQQVNTNSNDGHTAAWNPSVPMPYIQAPNINGSSLESASMGLQRYHDAAGNRNVLRFPPPPPPVNQQHPNYHHPTLPMQGIRGHNISFHPPVAAASFRVPPNPPRGSVIPPQTGFEAGPRHIIPAPSTGFRIYRPHRLMPETALGHRSLPPVGFLQVDDVALIDEVGNLIDHHRDMRLDIEDMSYEDLLALGERIGSVNTGLSEETIANQLKTKIYSTKATAINLEEVASDDQETDSCIICQDDFKNEEKIGILRCEHEYHEDCLTKWLLVKNVCPICKSEALAPGRNDA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03342 523 SMART ring_2 471 511 IPR001841 -
Trre11g03342 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 431 516 IPR013083 -
Trre11g03342 523 Pfam Ring finger domain 469 512 IPR001841 -
Trre11g03342 523 SUPERFAMILY RING/U-box 465 516 - -
Trre11g03342 523 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
Trre11g03342 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 84 516 IPR045191 GO:0061630
Trre11g03342 523 FunFam E3 ubiquitin ligase BIG BROTHER 431 516 - -
Trre11g03342 523 CDD RING-H2_RNF24-like 469 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03342 Trre-Chr11 45487552 45490078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03342 388 516 C3H Transcription Factor Family AT2G15530 44.444 2.39e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03342 K19041 - gmx:100800642 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03342 11 45487552 45490078 Trre11g03342 11 45487552 45490078 ECH