Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03333 ATGAACCCTAATTGGGTTCAACTCCAACAAAAGCTGAATCTTAATGGCCCCAAAGTTACAAGGAACTTCAATGATTCTGATGATGACATCCCAAATTCAATATTGGGGAAATGTAAAGAGAGGCTGGATGATGATGATTCTGATGATTGTGAGATTAACCCTCTTGCTCCTGTAAATGATGATGCAAGTTTGACAGATGTTGTGGCCATGGATTGCGAAATGGTTGGGGTTGGTCAAGGAAACAAAAGTGCCCTTGCAAGAGTAACACTGGTTAACAAGTGGGGTAATGTTATTTATGACGAGTTTGTACGGCCAATGGAGCGGGTTGTTGACTTCCGTACTAAAATTAGTGGCATAAGACCCCGGGATCTGAGAAAAGCAAAGGATTTTTCTACTGCTCAGAAGAAGGTGGCAGAGTTGATCCACGGAAGGATCCTTGTAGGTCATGCCTTGTCCAATGATCTTAAGGCATTATTATTAAGTCATCCGAAAAAGGATATACGAGATACCTCCGAGTACCCTCCATTTCTAAGGTCAAGTGGTAGAGTAGCATTACGGCATCTCGCTTCGGAGCATCTTGGTGCTAAGATTCAAACAGGAGAGCACTGCCCGATAGATGACGCCCGTGCTGCTATGATGCTTTACCAGAAAAATAGAAAAGAATGGGAGAAGAGCATAAAAGGTAACTTTCGGTCCAAACAGAAGCAAAAGAAACGGAAGAAGATAAAAGATGCCGAATAA 741 0.4251 MNPNWVQLQQKLNLNGPKVTRNFNDSDDDIPNSILGKCKERLDDDDSDDCEINPLAPVNDDASLTDVVAMDCEMVGVGQGNKSALARVTLVNKWGNVIYDEFVRPMERVVDFRTKISGIRPRDLRKAKDFSTAQKKVAELIHGRILVGHALSNDLKALLLSHPKKDIRDTSEYPPFLRSSGRVALRHLASEHLGAKIQTGEHCPIDDARAAMMLYQKNRKEWEKSIKGNFRSKQKQKKRKKIKDAE 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03333 246 Pfam Exonuclease 68 215 IPR013520 -
Trre11g03333 246 FunFam Interferon-stimulated exonuclease gene 20 63 234 - -
Trre11g03333 246 SUPERFAMILY Ribonuclease H-like 67 221 IPR012337 -
Trre11g03333 246 MobiDBLite consensus disorder prediction 225 246 - -
Trre11g03333 246 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 55 235 IPR047021 GO:0004527
Trre11g03333 246 Coils Coil 205 225 - -
Trre11g03333 246 Gene3D - 62 242 IPR036397 GO:0003676
Trre11g03333 246 CDD REX4_like 68 216 IPR037431 GO:0006364|GO:0008408
Trre11g03333 246 SMART exoiiiendus 66 224 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03333 Trre-Chr11 45369144 45374176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03333 67 221 C2H2 Transcription Factor Family AT5G40310 37.427 5.71e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03333 K18327 - gmx:100819122 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03333 11 45369144 45374176 Trre11g03333 11 45369144 45374176 ECH