Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03332 ATGAAGAAATCCAAGCAAACCCAAATGAACCCTAATTGGGTTCAACTCCAACAAAAGCTGAATCTTAATGGCCCCAAAGTTACAAGGAACTTCAATGATTCTGATGATGACATCCCAAATTCAATATTGGGGAAATGTAAAGAGAGGCTGGATGATGATGATTCTGATGATTGTGAGATTAACCCTCTTGCTCCTGTAAATGATGATGCAAGTTTGACAGATGTTGTGGCCATGGATTGCGAAATGGTTGGGGTTGGTCAAGGAAACAAAAGTGCCCTTGCAAGAGTAACACTGGTTAACAAGTGGGGTAATGTTATTTATGACGAGTTTGTACGGCCAATGGAGCGGGTTGTTGACTTCCGTACTAAAATTAGTGGCATAAGACCCCGGGATCTGAGAAAAGCAAAGGATTTTTCTACTGCTCAGAAGAAGGTGGCAGAGTTGATCCACGGAAGGATCCTTGTAGGTCATGCCTTGTCCAATGATCTTAAGGCATTATTATTAAGTCATCCGAAAAAGGATATACGAGATACCTCCGAGTACCCTCCATTTCTAAGGTCAAGTGGTAGAGTAGCATTACGGCATCTCGCTTCGGAGCATCTTGGTGCTAAGATTCAAACAGGAGAGCACTGCCCGATAGATGACGCCCGTGCTGCTATGATGCTTTACCAGAAAAATAGAAAAGAATGGGAGAAGAGCATAAAAGGTAACTTTCGGTCCAAACAGAAGCAAAAGAAACGGAAGAAGATAAAAGATGCCGAATAA 765 0.4235 MKKSKQTQMNPNWVQLQQKLNLNGPKVTRNFNDSDDDIPNSILGKCKERLDDDDSDDCEINPLAPVNDDASLTDVVAMDCEMVGVGQGNKSALARVTLVNKWGNVIYDEFVRPMERVVDFRTKISGIRPRDLRKAKDFSTAQKKVAELIHGRILVGHALSNDLKALLLSHPKKDIRDTSEYPPFLRSSGRVALRHLASEHLGAKIQTGEHCPIDDARAAMMLYQKNRKEWEKSIKGNFRSKQKQKKRKKIKDAE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03332 254 Pfam Exonuclease 76 223 IPR013520 -
Trre11g03332 254 FunFam Interferon-stimulated exonuclease gene 20 71 242 - -
Trre11g03332 254 SMART exoiiiendus 74 232 IPR013520 -
Trre11g03332 254 Gene3D - 70 250 IPR036397 GO:0003676
Trre11g03332 254 MobiDBLite consensus disorder prediction 233 254 - -
Trre11g03332 254 SUPERFAMILY Ribonuclease H-like 75 229 IPR012337 -
Trre11g03332 254 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 39 243 IPR047021 GO:0004527
Trre11g03332 254 Coils Coil 213 233 - -
Trre11g03332 254 CDD REX4_like 76 224 IPR037431 GO:0006364|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03332 Trre-Chr11 45369144 45374200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03332 75 229 C2H2 Transcription Factor Family AT5G40310 37.427 5.81e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03332 K18327 - gmx:100819122 389.037