Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03324 ATGCGACCATCATCTTCTTCATTGGGTAGGGGAGACGGCGGATCAGGTTTGCGGGTTAAGAAGAAACATAAGAAGTTAGAGGCAATATGTGAGGAAGAGTATAATCGAAATCACGGTGAGTTGAATGAGGGTGATGATTTGAATCCTGATTTGGGGGTTCGGAGAAGCTCAAGGGTTAGGCGTGCCCCGGATTTACTTGATGCTTCTCCTTCGCCCAAGAGGAAACGGCAGAAGTTAGGGAAGGATGTAACACCGAAGAGTGTGGAAGGGGATAAGAGTTTAGGGAGAGATATTGGTGGTTCTAGTGGTGGGAAATGGAGTTTGAGATCGAGAACAAGGGGTAAGAATGTGGAATTTGAGGTGAAGGAGGAGAATGAATTTCCTCGGAGGAAAAGGAAGCTGTTTGATAAGGAGTTGGAGGCTGTGCAGGTTGATAAGAAGGACGAAATGGAGGTTGTGGAGGACAATAGGGAGGAGGAATTGGAGGTTATGGAGCGTGCTAGAGAGGAGGAATTAGAGGCTGTGGAGGCTAATAAGGAGGAGGAATTGGTGGTTGTGGAGGTTGATAAGAAAGAGGATTTTAAATGGTTTACACGAAGAAAGTTTAAGTCGAAGAAGAGAATGGGGAAAATTGAAGCGACAAACTATGAAAAAGGGCTTAATGAAAATGAGTGTCAAGGGAATTTGGATGAGAGTAAGAGTCAAGAAATGGAGTTTGTAGTTGACTTGAACAAAGGCGAGGGGAGTGTTTCGGTTCCGGACACCGAATTGGCTGATGAGGATCCAATAGATTTGAGGGATGAGAATGCTGCTTCCGTGACAGGGAACAAGGAGAGAATTGAAACAGACAATTTGCAAGCTGAGGAGTGTAATGGTGATGTTGAACCGGCTCTGGTGGAATGTGTAGAAATTGTGGATGAACAATGTGATAAGTTAGAGAGTGAGAAGGATGGAAAAGTTGGTAGTGATGTGGCTGAAATTGCTGCAGTTTCAACTGAGCATGTAGATAATGAAGGTTCTGTTGATAAGGAGGTTGGCATTGATGAAAACGTCTCAAAAGATAAGAATGTTGAGAGAACGGATGAGTTGAAACAAGCATCAAATGACAAGTCTGAGTACCGATGTATCAAAGAGGGAAGACGGTGTGGATTGTGTGGAAGAGGGAGCGATGGTAAGCCTCCAAAAAGGTTAATTCAAGATAACGGTGAAAGTGAGAACGAAGCCTATAGCGGGTCATCAGCTTCAGAGGAGCCCACTTACGATACCTGGGATGGTTTTGATGATGAGCCTGGCTGGCTTGGGCGTCTGTTGGGCCCTATTAATGATCGCTACGGTATTGCTGGAATATGGGTGCATCAGAATTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCTGGCTTGGGATGCTTGAAAAATGTGAGGGCTGCACTTTGCCGAGGAAGAGCGTTGAAGTGTACACGTTGTGGGAGGCGAGGGGCAACCATTGGTTGTCGTGTTGATCGTTGTCCTAGAACCTATCACTTGCCTTGTGCTAGAGCAAATGGTTGCATCTTTGATCATCGCAAATTTCTTATAGCTTGTACAGACCATCGACATCTTTTCCAACCTTCTGGTAATAAATATTTCGCCCGGATAAAGAAGTTGAGGGCTAGGAAAATGATGTGGGAGACAAAGAAGCGTTCAAATGATGCTTCAAGAAAGGATATTGACGCAGAAGAGAGATGGTTAGAAAATTGTGGGGAGGATGAAGAATTTTTGAAACGCGAGAACAAGAGGCTTCATCGTGATTTATTGAGAATAGCCCCAGTGTATATTGGTGGTTCAGATTCTGCCGCCGGTGAAAATTCATTTCAGGGATGGGAATCCGTTGCTGGGCTTAAAGATGTCATCCGTTGTATGAAAGAAGTTGTTATTATTCCTCTGCTATATCCTAATTTCTTCGATAACTTGGGGCTGACACCCCCAAGAGGCGTTCTTTTGCATGGGTATCCTGGAACAGGGAAAACCTTAGTAGTCCGGTCATTGATAGGTGCATGTGCTCGTGGAGATAGACGGATTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAATACGTAGGTGATGCTGAGCGTCAACTAAGACTATTATTTCAGGTTGCTGAGAAATGTCAACCTTCTATAATATTCTTTGATGAGATAGATGGACTGGCACCCTGCAGAACTCGGCAGCAAGATCAGACTCATAGTTCTGTCGTGTCAACATTGCTTGCTCTTATGGATGGTTTGAAATCTAGGGGATCAGTTGTAGTCATAGGCGCAACAAACCGTCCTGAAGCTGTTGACCCTGCGCTTAGGCGCCCTGGAAGATTTGATCGGGAAATTTACTTTCCATTGCCGTCAACTGAAGACAGAGCTTCCATTCTCTCACTTCACACACAGAAATGGCCAAAACCAATTAGTGGATCCTTACTTGGGTGGATTGCAAAAAAAACTTCTGGCTTTGCTGGTGCTGATCTCCAGGCTCTTTGTACACAAGCGGCCATGAATGCACTAAAGAGGAATTTCCCTTTGCAAGAGGTGCTATCTGTAGCTGAAAAAAGACATTCTTCTGGCTGTAAGAACACTCCTCTTCCATCCTTTTCTGTGGAGGAGAGGGATTGGGTAGAAGCTTTTTTGTCTTCGCCATTACCTTGTTCCCAGAGAGAAGCTGGAAATGCTGCAAATGATGTAGTATGCTCCCCTCTTCCTGTCCAACTTGTTCCTTGTTTACTGCGGCCATTATGCACTATTCTTTTATCTCTTTATCTCGATGAACGTCTGTGGTTGCCACTTCCTATATCGAAAGCTGTGACATTGATTAAGAATGTAATGGTTTCTGCTCTAGACAAAAAGAAAATGCCTATTGATCATTGGTGGTTGCACCTTGATGATTTTCTTCAAGAAACAAATGTTGCTTATGAGGTAAGTAAGTGCCTTAGTTGTTCTGGCATTTTATCTGCAGACCGTGGCTTTTCTGGTTCTTGTGATATTGTGGATCATGATGATGACAAACCCTCCTTAAAGAACCATGCTAGCATGCGTAATGGTAGATTACCAGACATGTCATTTGCATCGACCAACAAATCAGGATTTCGAATATTGATTTACGGAAATCCCCGGTCTGGCCAGAGACATCTTGCTTCGTGCCTTCTTTACTGTTTTGTTGGAAATATTGAAGTACAAAAGATTGATATGGCAACTATTACACAAGAAGGGCATGGAGATGTTGTGCAAGGGATTTCCCAAATATTAATGAAATGTGCTAGCATGAAATCTTGTGTAATATTCATGCCAAGAATTGATTTGTGGGCTGTGGTGGAAGATTTCCAAATTGCTGAGAAGACTGATTCTTGCTCAATAAATCATCTATCATCTGAGACGGACTCGTCTTCTTTCACTCGAAGCCAAATTGTTGAGAAGGAAAATGGGATCAATACTGGGAAAAACTCTGCAGAGATGACCAAATGCCAAGCCAACAAAAAGGCTTCATATGCCTGGATGTCGTTTATTGAGCAGGTGGAGTCCATTGGTTCATCCACATCCTTGATGATTCTGGCTACTTCAGAAGCTCCCTATACTGAACTTCCACACAAGATAAGAGGATTCTTCAAGAGCTATCAATCTAAGGATACCCAATCAAGTCCTTTAGTACAAACAGTTCCTCAATTCTCTCTGCAGATTGATGGGAATTTTGATCACGACTTGGCGATCAATCTATCTGCAATCGAGCTTTTAAGAACTGTAGTTGAGCAGCGGGTTCAATTGATTCATCAGAGATCTCACGCTCACATGGATGTCCATAAAGGAAAGATAGCATATGAGCCAATTGAAATTTGTAAAGAAAAGGTAACTCAGAGAAATGAAAACGAACCAGCCAACACGAATAAGGGTGAAGTCCAATCTCCTGAGTTCTTGACCAAAGGTCCACAGCCCAACAGTAGGTCACTGAAGGGAAAGTCGAATCTTTTAATGGCAATATCCACATTTGGCTATCAAATTCTTATATACCCTCATTTTGCTGAACTTTGTTGGGTCACTTCAAAACTCAAAGAAGGTCCTTGTGCTGATGTGAGTGGACCTTGGAGGGGTTGGCCTTTCAATTCATGTATAATTCGTCCTAACAATTCACAAGACAAGGTGGTAATTTCCAGTAGCTCTGGTGGCACAAAAAGCAAAGAAAGTGCTGGATTAGTTAGAGGCTTGGTTGCTGTTGGTTTATCAGCATACAAAGGTATTTATAAATCAGTTAGGGAAGTTTCCCATGAGGTAAGGAAAGTACTCGAGATCTTAACTGAGACAATTAACATGAAAATTCAGTCTGGGAAAAACAGATATCAGTATCTGCGTATTTTATCACAAGTTGCGTATTTGGAAGATATGGTCAACAACTGGGCTTATGCATTGCTTAGTCTAGATCAGGATTCCCCAGAGCTTGCAGCAAAGGTTATACCAGCCGCTGCCGGGCCTTTAAACAGTCATCTCGCATGTGAAGACCACCACCAAGCCGAAGGTGAGGATTGCCATTTGGTTGTTCCTGCTAATGGTGATGATTTGGAGACACTGGCGAGAAGTCGTAACGGAGTTCCTACTGCAACAACTGAGCGGCTTTCCTTGAATGAAATAAATGATAATTTAGGTAATACTGATTGTGATGGCCAAAAAGCATGTTCTGAAGAATCTCCACATAACCATCCTTGTCCAGATACGCATATTAATGACTCTTGTCTTGGAAACCAACCTCTTCATCCATCCTTGAATCAGGAGAATGGGGTATTACCTGGACTGTCTGAATCAGTAACTGCTGAAAATCACGACACTGCAGACGGAGAACTTGGAATGTCGAAAGACTTGAATAAATCAACATGCACTGACTCTGCCGTCCTTTCTGAAAATGGATTTCGCACAACCTGTGAACAAGAGAGTGTTAAGATTGGTAACTTAAAATCAAGTGATGTTGAATCTGATAAACATGAGAATATTATAGATATCAATGCCTCTTCAAGTAAGGACAGTGGTCCAGCTGAATCTGGAGTAGTTTGCTTTTATCAATGTTGCCCTCAATGTCTCCGCAGTCTCTATAATTTCACACGCAAAATGCTCGTTCGTGGGTGGGGATCGAATAGAAGCCATTGGACAATAGAAGATGTCCATGATGCTGTTTCGACATTATCTGTAGATCTTATCTCAGAAGTTAGAAAATGTTACATGGTAGAAGATTTCACTGATTTATCTAATAAAACGCCAAGACATGAAAAGCATGCAACATTTCCGACAACGTGCAATACTGAAAACCGAGGCAAAGATGTTATGCCGGCTGAATGCGTTTCTCACTTGGCGAGTCAAGGTACAAGTGTAAGCAAAGACACAGTATCAAATGAACCATCAAAGCTTGATTTGAAATTTGTTTTCAGAGATGGTGTGCTAGTTCCTGCAGACCCTGCAAAGGATGCCCCTCTTCACTGTAAATTTGAGAAACTGTGTCTTTGTTCACTGATAGAGTTAATAGTAAAAACTAAGGGACCTTTAGATTAA 5556 0.4258 MRPSSSSLGRGDGGSGLRVKKKHKKLEAICEEEYNRNHGELNEGDDLNPDLGVRRSSRVRRAPDLLDASPSPKRKRQKLGKDVTPKSVEGDKSLGRDIGGSSGGKWSLRSRTRGKNVEFEVKEENEFPRRKRKLFDKELEAVQVDKKDEMEVVEDNREEELEVMERAREEELEAVEANKEEELVVVEVDKKEDFKWFTRRKFKSKKRMGKIEATNYEKGLNENECQGNLDESKSQEMEFVVDLNKGEGSVSVPDTELADEDPIDLRDENAASVTGNKERIETDNLQAEECNGDVEPALVECVEIVDEQCDKLESEKDGKVGSDVAEIAAVSTEHVDNEGSVDKEVGIDENVSKDKNVERTDELKQASNDKSEYRCIKEGRRCGLCGRGSDGKPPKRLIQDNGESENEAYSGSSASEEPTYDTWDGFDDEPGWLGRLLGPINDRYGIAGIWVHQNCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRRGATIGCRVDRCPRTYHLPCARANGCIFDHRKFLIACTDHRHLFQPSGNKYFARIKKLRARKMMWETKKRSNDASRKDIDAEERWLENCGEDEEFLKRENKRLHRDLLRIAPVYIGGSDSAAGENSFQGWESVAGLKDVIRCMKEVVIIPLLYPNFFDNLGLTPPRGVLLHGYPGTGKTLVVRSLIGACARGDRRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSTEDRASILSLHTQKWPKPISGSLLGWIAKKTSGFAGADLQALCTQAAMNALKRNFPLQEVLSVAEKRHSSGCKNTPLPSFSVEERDWVEAFLSSPLPCSQREAGNAANDVVCSPLPVQLVPCLLRPLCTILLSLYLDERLWLPLPISKAVTLIKNVMVSALDKKKMPIDHWWLHLDDFLQETNVAYEVSKCLSCSGILSADRGFSGSCDIVDHDDDKPSLKNHASMRNGRLPDMSFASTNKSGFRILIYGNPRSGQRHLASCLLYCFVGNIEVQKIDMATITQEGHGDVVQGISQILMKCASMKSCVIFMPRIDLWAVVEDFQIAEKTDSCSINHLSSETDSSSFTRSQIVEKENGINTGKNSAEMTKCQANKKASYAWMSFIEQVESIGSSTSLMILATSEAPYTELPHKIRGFFKSYQSKDTQSSPLVQTVPQFSLQIDGNFDHDLAINLSAIELLRTVVEQRVQLIHQRSHAHMDVHKGKIAYEPIEICKEKVTQRNENEPANTNKGEVQSPEFLTKGPQPNSRSLKGKSNLLMAISTFGYQILIYPHFAELCWVTSKLKEGPCADVSGPWRGWPFNSCIIRPNNSQDKVVISSSSGGTKSKESAGLVRGLVAVGLSAYKGIYKSVREVSHEVRKVLEILTETINMKIQSGKNRYQYLRILSQVAYLEDMVNNWAYALLSLDQDSPELAAKVIPAAAGPLNSHLACEDHHQAEGEDCHLVVPANGDDLETLARSRNGVPTATTERLSLNEINDNLGNTDCDGQKACSEESPHNHPCPDTHINDSCLGNQPLHPSLNQENGVLPGLSESVTAENHDTADGELGMSKDLNKSTCTDSAVLSENGFRTTCEQESVKIGNLKSSDVESDKHENIIDINASSSKDSGPAESGVVCFYQCCPQCLRSLYNFTRKMLVRGWGSNRSHWTIEDVHDAVSTLSVDLISEVRKCYMVEDFTDLSNKTPRHEKHATFPTTCNTENRGKDVMPAECVSHLASQGTSVSKDTVSNEPSKLDLKFVFRDGVLVPADPAKDAPLHCKFEKLCLCSLIELIVKTKGPLD 1851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03324 1851 MobiDBLite consensus disorder prediction 403 419 - -
Trre11g03324 1851 Pfam ATPase family associated with various cellular activities (AAA) 658 793 IPR003959 GO:0005524|GO:0016887
Trre11g03324 1851 PANTHER AAA DOMAIN-CONTAINING 17 1754 IPR045199 -
Trre11g03324 1851 SMART AAA_5 654 795 IPR003593 GO:0016887
Trre11g03324 1851 Gene3D - 619 793 IPR027417 -
Trre11g03324 1851 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 794 887 - -
Trre11g03324 1851 Coils Coil 150 181 - -
Trre11g03324 1851 MobiDBLite consensus disorder prediction 24 93 - -
Trre11g03324 1851 ProSitePatterns AAA-protein family signature. 763 781 IPR003960 GO:0005524|GO:0016887
Trre11g03324 1851 Pfam AAA+ lid domain 819 851 IPR041569 -
Trre11g03324 1851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 851 IPR027417 -
Trre11g03324 1851 Pfam PHD-like zinc-binding domain 452 531 - -
Trre11g03324 1851 FunFam ATPase family, AAA domain-containing 2 617 800 - -
Trre11g03324 1851 MobiDBLite consensus disorder prediction 1292 1324 - -
Trre11g03324 1851 Gene3D - 794 854 - -
Trre11g03324 1851 MobiDBLite consensus disorder prediction 1 112 - -
Trre11g03324 1851 MobiDBLite consensus disorder prediction 390 421 - -
Trre11g03324 1851 MobiDBLite consensus disorder prediction 1296 1324 - -
Trre11g03324 1851 MobiDBLite consensus disorder prediction 245 277 - -
Trre11g03324 1851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 376 533 IPR013083 -
Trre11g03324 1851 ProSiteProfiles Extended PHD (ePHD) domain profile. 419 531 IPR034732 -
Trre11g03324 1851 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 377 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03324 Trre-Chr11 45297360 45307269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03324 620 855 Calmodulin-binding Proteins AT3G56690 40.336 3.80e-44 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03324 - - gmx:100803849 2439.07