Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03276 ATGGAGGATAATTCTGAGAGTTCTAGGGCTTTGAATAGTTCTGGAGTCTCAGATAGGAACCAAAGGGAAAATCCTTTTTCGGGCGAGGGATCGCAGGATTCTAGGTTTAGAAAGGAAAGAGATTGGATTCATGGTGTACAAGGTGATCAAAACAAAAACCTAGGTGGATTTTGTGAGGATGAAGTTGAGAATGAGAATGAACCTTTCTTTGGTTCAGTAGAATGGGGTGATATTAGTTTGAGGCAATGGTTGGATAAATCCGATCGGTCGGTAGATTTCTTTGAATGCTTGCATATATTTAGGCAAATAGTAGAGATTGTTAATGCGGCACATTGTCAAGGTGTTGTAGTTCATAATGTGAGGCCTTCCTGCTTTGTCATGTCGTCTTTCAATCATATCTCGTTTATTGAATCGGCTTCTTGTTCGGATACCAGTTCGGATTCTTTAGGAGATGGAATGAACAACGACCAAGGTGTTGAGGTTAAAACTCCGACATCTCACTGTCCTCATGATATGCATCATCAGCAGAGTTTAGGAAGTGAAGATTTTATGCCTGCTGCCAAGATTTCGATGGATGCTCGGTCTGATTCTAGTTGCATGCTGTCAAGTGCTGTCTATGCAGCTCGTGCGTCGTTAATAGAAGAAACGGAAGAAAATAAAATGAAAGATAGGAGGAAGGATGAAGAAGTGGAAGGAAAGAAGCAATCGTTTCCGATGAAACAAATACTTCTAATGGAGATGAGTTGGTATACTAGTCCCGAAGAAGTTGCCGGTACTCCTAGTTCATGTGCTTCAGATGTTTACAGATTGGGGATTCTTCTTTTCGAGCTATTCTGTCCACTAAGCTCAAGAGAAGAGAAAAGTAGAACAATGTCTAGTCTTAGACATAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAGGAAGCTTCATTTTGCTTATGGTTACTACATCCTGACCCTAGCAGTCGTCCAACACTAGGCGAGTTGTTGCAGAGTGAGTTCCTTAATGAACAGCGTGATGATATGGAAGAACGTGAAGCAGCAATAGAGCTTAGACAAAAGATAGAAGATCAGGAGTTGTTACTCGAATTCCTTTCGTTACTTAAACAAAGAAAACAGGAAGTTGCTGAAAAGTTGCAACACACAATCTCTTTTCTGTGTTCAGATATCGAAGAAGTGACCAAGAAGCAAACAAGATTTAAAGAGATTTCCGGTGTTGAACTAGGGAGTGACGATCGTTTGACATCAACTTTTCCATCCATGACAGTTGTTGATGGTGAGGATTCCGCCTGTTTAGGAACTAGAAAACGAGTCAGACAAGGGATGCATATTGATGATTATGACGATAACGTGGAGAATGATCAAAAAAATCAGGGAAGTTTTCTTTCAAAAAGTTCACGGCTAATGAAAAACTTCAAGAAACTTGAATCAGCATACTTTTTAACACGATGCAAACCAACCTATTCCTCGGGAAGACTGGCAGTTAGACATTCACCTATAGCACCAAATGATGGGAGAGGGTCTGTCGTCTTGACCGAAAGAAGTTGCATCAATAACTTGGCGTTGAAAGAGCAAGGAAGAGACAGCGCAAGTGCTTGGATAAATCCCTTTCTTGAGGGTTTGTGCAAGTACTTATCTTTCAGTAAGCTCAAGGTAAAAGCTGACTTGAAGCAAGGAGATCTTTTGCATTCTTCCAACTTAGTATGCTCGCTAAGTTTCGATCGTGACGGAGAATTTTTCGCCACCGCCGGTGTGAATAAGAAAATCAAAATATTCGAATGTGATACAATCATAAACGAGGATCGTGATATCCACTATCCGGTAGTGGAGATAGCGTGCAGATCAAAGTTGAGCAGTTTATGTTGGAATACATACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAATTATGGGATGTTACAAGAAGTCAAGTGCTATCTGAAATGAGGGAGCACGAGCGGCGAGTGTGGTCCATTGATTTCTCATCAGCAGATCCAACAATGTTGGCGAGTGGAAGCGACGACGGTTCCGTTAAGCTATGGAGTATCAATCAGGGAGTTAGTGTCGGAACCATTAAAACAAAGGCGAATGTATGCTGCGTTCAGTTTCCTCTCGATTCTGCTCGTTATCTTGCGTTTGGTTCAGCAGATCACCGGATATATTACTATGATCTACGCAACTTAAGAGTACCGCTTTGTACTTTGGTTGGACATAATAAGACGGTGAGCTGCATCAAGTTTGTAGACAATGCCAACCTTGTCTCTGCGTCCACGGACAACACTTTGAAGCTTTGGGATTTGTCTACTTGTGCATCTCGAGTTATTGACTCGCCAATTCAATCGTTCACCGGTCACATGAATGTTAAGAACTTTGTGGGATTATCGGTATCGGATGGTTATATCGCTACTGGTTCAGAGACAAACGAGGTATTCGTATACCACAAGGCCTTCCCTATGCCAGCATTGCAATTCAAGTTTCGAAACACAGATCCAATATCCGGTCACGAAGTTGACGATGCTGCACAGTTTGTTTCCTCAGTTTGTTGGCGCGGTCAGTCGCCAACCTTAATCGCCGCAAATTCCACAGGGAATGTGAAGATTCTCGAGATGGTTTGA 2634 0.4188 MEDNSESSRALNSSGVSDRNQRENPFSGEGSQDSRFRKERDWIHGVQGDQNKNLGGFCEDEVENENEPFFGSVEWGDISLRQWLDKSDRSVDFFECLHIFRQIVEIVNAAHCQGVVVHNVRPSCFVMSSFNHISFIESASCSDTSSDSLGDGMNNDQGVEVKTPTSHCPHDMHHQQSLGSEDFMPAAKISMDARSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYTSPEEVAGTPSSCASDVYRLGILLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQKIEDQELLLEFLSLLKQRKQEVAEKLQHTISFLCSDIEEVTKKQTRFKEISGVELGSDDRLTSTFPSMTVVDGEDSACLGTRKRVRQGMHIDDYDDNVENDQKNQGSFLSKSSRLMKNFKKLESAYFLTRCKPTYSSGRLAVRHSPIAPNDGRGSVVLTERSCINNLALKEQGRDSASAWINPFLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKIFECDTIINEDRDIHYPVVEIACRSKLSSLCWNTYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFPLDSARYLAFGSADHRIYYYDLRNLRVPLCTLVGHNKTVSCIKFVDNANLVSASTDNTLKLWDLSTCASRVIDSPIQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPALQFKFRNTDPISGHEVDDAAQFVSSVCWRGQSPTLIAANSTGNVKILEMV 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03276 877 ProSitePatterns Trp-Asp (WD) repeats signature. 759 773 IPR019775 -
Trre11g03276 877 Gene3D - 541 877 IPR015943 GO:0005515
Trre11g03276 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 655 697 IPR001680 GO:0005515
Trre11g03276 877 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 741 775 - -
Trre11g03276 877 Coils Coil 334 354 - -
Trre11g03276 877 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 655 692 - -
Trre11g03276 877 Gene3D Transferase(Phosphotransferase) domain 1 77 349 - -
Trre11g03276 877 ProSiteProfiles Protein kinase domain profile. 1 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03276 877 SUPERFAMILY Protein kinase-like (PK-like) 66 339 IPR011009 -
Trre11g03276 877 MobiDBLite consensus disorder prediction 1 39 - -
Trre11g03276 877 SMART WD40_4 831 875 IPR001680 GO:0005515
Trre11g03276 877 SMART WD40_4 734 772 IPR001680 GO:0005515
Trre11g03276 877 SMART WD40_4 648 688 IPR001680 GO:0005515
Trre11g03276 877 SMART WD40_4 609 645 IPR001680 GO:0005515
Trre11g03276 877 SMART WD40_4 691 730 IPR001680 GO:0005515
Trre11g03276 877 SMART WD40_4 560 595 IPR001680 GO:0005515
Trre11g03276 877 SMART WD40_4 781 820 IPR001680 GO:0005515
Trre11g03276 877 MobiDBLite consensus disorder prediction 7 31 - -
Trre11g03276 877 Pfam WD domain, G-beta repeat 737 772 IPR001680 GO:0005515
Trre11g03276 877 Pfam WD domain, G-beta repeat 565 594 IPR001680 GO:0005515
Trre11g03276 877 Pfam WD domain, G-beta repeat 651 688 IPR001680 GO:0005515
Trre11g03276 877 PANTHER PROTEIN SPA1-RELATED 2 26 877 IPR044630 GO:0009640
Trre11g03276 877 SUPERFAMILY WD40 repeat-like 565 874 IPR036322 GO:0005515
Trre11g03276 877 PRINTS G protein beta WD-40 repeat signature 675 689 IPR020472 -
Trre11g03276 877 PRINTS G protein beta WD-40 repeat signature 759 773 IPR020472 -
Trre11g03276 877 PRINTS G protein beta WD-40 repeat signature 632 646 IPR020472 -
Trre11g03276 877 CDD WD40 570 873 - -
Trre11g03276 877 SMART serkin_6 16 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03276 877 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 538 877 - -
Trre11g03276 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 741 775 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03276 Trre-Chr11 44793184 44803444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03276 645 819 Miscellaneous Gene Families AT5G08390 24.859 1.30e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Trre11g03276 WD40 0.0001 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03276 K26557 - gmx:100811457 1490.71