Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03275 ATGGAGGATAATTCTGAGAGTTCTAGGGCTTTGAATAGTTCTGGAGTCTCAGATAGGAACCAAAGGGAAAATCCTTTTTCGGGCGAGGGATCGCAGGATTCTAGGTTTAGAAAGGAAAGAGATTGGATTCATGGTGTACAAGGTGATCAAAACAAAAACCTAGGTGGATTTTGTGAGGATGAAGTTGAGAATGAGAATGAACCTTTCTTTGGTTCAGTAGAATGGGGTGATATTAGTTTGAGGCAATGGTTGGATAAATCCGATCGGTCGGTAGATTTCTTTGAATGCTTGCATATATTTAGGCAAATAGTAGAGATTGTTAATGCGGCACATTGTCAAGGTGTTGTAGTTCATAATGTGAGGCCTTCCTGCTTTGTCATGTCGTCTTTCAATCATATCTCGTTTATTGAATCGGCTTCTTGTTCGGATACCAGTTCGGATTCTTTAGGAGATGGAATGAACAACGACCAAGGTGTTGAGGTTAAAACTCCGACATCTCACTGTCCTCATGATATGCATCATCAGCAGAGTTTAGGAAGTGAAGATTTTATGCCTGCTGCCAAGATTTCGATGGATGCTCGGTCTGATTCTAGTTGCATGCTGTCAAGTGCTGTCTATGCAGCTCGTGCGTCGTTAATAGAAGAAACGGAAGAAAATAAAATGAAAGATAGGAGGAAGGATGAAGAAGTGGAAGGAAAGAAGCAATCGTTTCCGATGAAACAAATACTTCTAATGGAGATGAGTTGGTATACTAGTCCCGAAGAAGTTGCCGGTACTCCTAGTTCATGTGCTTCAGATGTTTACAGATTGGGGATTCTTCTTTTCGAGCTATTCTGTCCACTAAGCTCAAGAGAAGAGAAAAGTAGAACAATGTCTAGTCTTAGACATAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAGGAAGCTTCATTTTGCTTATGGTTACTACATCCTGACCCTAGCAGTCGTCCAACACTAGGCGAGTTGTTGCAGAGTGAGTTCCTTAATGAACAGCGTGATGATATGGAAGAACGTGAAGCAGCAATAGAGCTTAGACAAAAGATAGAAGATCAGGAGTTGTTACTCGAATTCCTTTCGTTACTTAAACAAAGAAAACAGGAAGTTGCTGAAAAGTTGCAACACACAATCTCTTTTCTGTGTTCAGATATCGAAGAAGTGACCAAGAAGCAAACAAGATTTAAAGAGATTTCCGGTGTTGAACTAGGGAGTGACGATCGTTTGACATCAACTTTTCCATCCATGACAGTTGTTGATGGTGAGGATTCCGCCTGTTTAGGAACTAGAAAACGAGTCAGACAAGGGATGCATATTGATGATTATGACGATAACGTGGAGAATGATCAAAAAAATCAGGGAAGTTTTCTTTCAAAAAGTTCACGGCTAATGAAAAACTTCAAGAAACTTGAATCAGCATACTTTTTAACACGATGCAAACCAACCTATTCCTCGGGAAGACTGGCAGTTAGACATTCACCTATAGCACCAAATGATGGGAGAGGGTCTGTCGTCTTGACCGAAAGAAGTTGCATCAATAACTTGGCGTTGAAAGAGCAAGGAAGAGACAGCGCAAGTGCTTGGATAAATCCCTTTCTTGAGGGTTTGTGCAAGTACTTATCTTTCAGTAAGCTCAAGGTAAAAGCTGACTTGAAGCAAGGAGATCTTTTGCATTCTTCCAACTTAGTATGCTCGCTAAGTTTCGATCGTGACGGAGAATTTTTCGCCACCGCCGGTGTGAATAAGAAAATCAAAATATTCGAATGTGATACAATCATAAACGAGGATCGTGATATCCACTATCCGGTAGTGGAGATAGCGTGCAGATCAAAGTTGAGCAGTTTATGTTGGAATACATACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAATTATGGGATGTTACAAGAAGTCAAGTGCTATCTGAAATGAGGGAGCACGAGCGGCGAGTGTGGTCCATTGATTTCTCATCAGCAGATCCAACAATGTTGGCGAGTGGAAGCGACGACGGTTCCGGAGTTAGTGTCGGAACCATTAAAACAAAGGCGAATGTATGCTGCGTTCAGTTTCCTCTCGATTCTGCTCGTTATCTTGCGTTTGGTTCAGCAGATCACCGGATATATTACTATGATCTACGCAACTTAAGAGTACCGCTTTGTACTTTGGTTGGACATAATAAGACGGTGAGCTGCATCAAGTTTGTAGACAATGCCAACCTTGTCTCTGCGTCCACGGACAACACTTTGAAGCTTTGGGATTTGTCTACTTGTGCATCTCGAGTTATTGACTCGCCAATTCAATCGTTCACCGGTCACATGAATGTTAAGAACTTTGTGGGATTATCGGTATCGGATGGTTATATCGCTACTGGTTCAGAGACAAACGAGGTATTCGTATACCACAAGGCCTTCCCTATGCCAGCATTGCAATTCAAGTTTCGAAACACAGATCCAATATCCGGTCACGAAGTTGACGATGCTGCACAGTTTGTTTCCTCAGTTTGTTGGCGCGGTCAGTCGCCAACCTTAATCGCCGCAAATTCCACAGGGAATGTGAAGATTCTCGAGATGGTTTGA 2610 0.4192 MEDNSESSRALNSSGVSDRNQRENPFSGEGSQDSRFRKERDWIHGVQGDQNKNLGGFCEDEVENENEPFFGSVEWGDISLRQWLDKSDRSVDFFECLHIFRQIVEIVNAAHCQGVVVHNVRPSCFVMSSFNHISFIESASCSDTSSDSLGDGMNNDQGVEVKTPTSHCPHDMHHQQSLGSEDFMPAAKISMDARSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYTSPEEVAGTPSSCASDVYRLGILLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQKIEDQELLLEFLSLLKQRKQEVAEKLQHTISFLCSDIEEVTKKQTRFKEISGVELGSDDRLTSTFPSMTVVDGEDSACLGTRKRVRQGMHIDDYDDNVENDQKNQGSFLSKSSRLMKNFKKLESAYFLTRCKPTYSSGRLAVRHSPIAPNDGRGSVVLTERSCINNLALKEQGRDSASAWINPFLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKIFECDTIINEDRDIHYPVVEIACRSKLSSLCWNTYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGSGVSVGTIKTKANVCCVQFPLDSARYLAFGSADHRIYYYDLRNLRVPLCTLVGHNKTVSCIKFVDNANLVSASTDNTLKLWDLSTCASRVIDSPIQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPALQFKFRNTDPISGHEVDDAAQFVSSVCWRGQSPTLIAANSTGNVKILEMV 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03275 869 Gene3D Transferase(Phosphotransferase) domain 1 77 349 - -
Trre11g03275 869 SUPERFAMILY WD40 repeat-like 565 866 IPR036322 GO:0005515
Trre11g03275 869 SUPERFAMILY Protein kinase-like (PK-like) 66 339 IPR011009 -
Trre11g03275 869 Coils Coil 334 354 - -
Trre11g03275 869 ProSiteProfiles Protein kinase domain profile. 1 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03275 869 Pfam WD domain, G-beta repeat 565 594 IPR001680 GO:0005515
Trre11g03275 869 Pfam WD domain, G-beta repeat 729 764 IPR001680 GO:0005515
Trre11g03275 869 MobiDBLite consensus disorder prediction 1 39 - -
Trre11g03275 869 MobiDBLite consensus disorder prediction 7 31 - -
Trre11g03275 869 ProSiteProfiles Trp-Asp (WD) repeats profile. 733 767 IPR001680 GO:0005515
Trre11g03275 869 PANTHER PROTEIN SPA1-RELATED 2 26 869 IPR044630 GO:0009640
Trre11g03275 869 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 733 767 - -
Trre11g03275 869 Gene3D - 541 869 IPR015943 GO:0005515
Trre11g03275 869 SMART serkin_6 16 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03275 869 SMART WD40_4 726 764 IPR001680 GO:0005515
Trre11g03275 869 SMART WD40_4 773 812 IPR001680 GO:0005515
Trre11g03275 869 SMART WD40_4 648 682 IPR001680 GO:0005515
Trre11g03275 869 SMART WD40_4 683 722 IPR001680 GO:0005515
Trre11g03275 869 SMART WD40_4 823 867 IPR001680 GO:0005515
Trre11g03275 869 SMART WD40_4 609 645 IPR001680 GO:0005515
Trre11g03275 869 SMART WD40_4 560 595 IPR001680 GO:0005515
Trre11g03275 869 ProSitePatterns Trp-Asp (WD) repeats signature. 751 765 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03275 Trre-Chr11 44793184 44803444 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Trre11g03275 WD40 8.7e-06 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03275 K26557 - gmx:100811457 1461.05