Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03252 ATGGAAGCTAGCAGTAGTACTATAGGGAGGAAGAAAACATTAGTTGAAGAAATAGAAAACGAAGACAAGGAAGATGAAGATGAAAATTGTGGTGTTGAAAAAGTTGAGAAAAAGAAAGGTGTTTGTGTGAGTGAAAGAAAAGGACCAAGTAGATGTGGAAGATTTTCAAAACCTATTTGTCAAGCAGAAAATTGTGAAGTTGATTTAACTTTTATGAAAAGGTATCATCGTCGCCATAAGGTTTGTGAGTTTCATTCCAAGGTACCTTATGTGATGGTTGCAGGATTGAAGCAGAGGTTTTGCCAACAATGTAGCAGGTTCCATGAGCTTATAGAGTTTGATGAAGCTAAAAGAAGTTGCCGAAAACGCTTAGCGAGACACAATGAACGGCGTCGCAAAAGCACTATCGGAAATTGTAATGAAAGAAGGTGTACTGGCATCGAAGGGCAGGAAATTAACGATGGTGATTGGAGAAACATTCATATGAACATGACAAGTAGTTCTGGTCACGAGAATATCCATAAATTTTTAATTTCAAATGAATATCCATAA 552 0.3696 MEASSSTIGRKKTLVEEIENEDKEDEDENCGVEKVEKKKGVCVSERKGPSRCGRFSKPICQAENCEVDLTFMKRYHRRHKVCEFHSKVPYVMVAGLKQRFCQQCSRFHELIEFDEAKRSCRKRLARHNERRRKSTIGNCNERRCTGIEGQEINDGDWRNIHMNMTSSSGHENIHKFLISNEYP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03252 183 MobiDBLite consensus disorder prediction 1 26 - -
Trre11g03252 183 FunFam Squamosa promoter-binding-like protein 14 51 121 - -
Trre11g03252 183 ProSiteProfiles Zinc finger SBP-type profile. 57 134 IPR004333 GO:0003677
Trre11g03252 183 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 46 135 IPR044817 GO:0003677
Trre11g03252 183 Pfam SBP domain 60 133 IPR004333 GO:0003677
Trre11g03252 183 Gene3D - 55 121 IPR036893 GO:0003677|GO:0005634
Trre11g03252 183 SUPERFAMILY SBT domain 58 137 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03252 Trre-Chr11 44242244 44245597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03252 56 136 SBP-box Gene Family AT2G33810 67.901 9.94e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre11g03252 SBP 5.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03252 - - gmx:100815775 172.17