Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03248 ATGGAGGATCTAGCTGGTCTAGTCGAGGCAACTGGATCGAGATTTACTTCGTTGGAGCTTATTGGGCAGGGATCATTTGGCGATGTATATAAAGGGTTTGACAAGGAGCTCAACAAAGAAGTTGCCATCAAAGTGATTGATTTGGAAGAGTCAGAGGATGACATTGACGATATTCAGAAGGAAATTTCTGTTCTGTCACAATGCCGTTGTCCATACATTACCGAGTATTATGGTTCTTTTCTCAATCAGACTAAACTATGGATAATAATGGAGTATATGGCTGGCGGCTCTGTTGCTGATCTACTCCAATCAGGTCCTCCCCTAGATGAAATGTCAATTGCTTATATTCTTCGTGATTTGTTGCATGCTGTTGATTACCTACATAGTGAAGGCAAAATCCATAGAGACATTAAAGCTGCAAACATTTTATTGTCCGAGAATGGTGATGTAAAGGTTGCAGATTTTGGTGTCTCTGCACAATTGACAAGGACTATATCAAGGAGAAAGACATTTGTAGGCACACCATTCTGGATGGCGCCTGAGGTTATTCAGAACTCAGATGGATATAATGAGAAGGCAGATATCTGGTCTCTGGGGATCACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGGGTGCTTTTCATCATACCCCGAGAAAATCCTCCACAGCTAGATGAGCATTTTTCTCGACCCATGAAAGAATTTGTTTCATCATGTTTGAAGAAGGTTCCGGCTGAGAGGCCAAGTGCTAAGGAACTTCTCAAAGACCGTTTTATTCGCAATGCTAGGAAGAGTCCAAAGCTTTTGGAAAGATTAAGTAGGGAGCGTCCAAAATATCAAGTTAAGGAAGACCTGGAGACAGCTAGAAATGGCCAAAGAGGGATTGGTGAGGGATCAGACACTATGAAGGTTGCAAGAGATTCTAAAGTTGATGAAATCAATCGATCCAGCAGTCAGGGCAAGACCCCGAAAAGTTCTGAATGGGACTTTAGCATTGGTGAATCAGAGGGTACTGGAACCTTTCGAAGTGTTTCACGGCCACCACAGTCTAGAGATAAGAAAACTGAAGGTTCATATAATCAGCTTACCCAAAGAAAAGCTCTAGACACTGGCTATCAAGGAGGATTTCCCAATAGAAGTTCATTCAATCAATCACTTGAAAAAGATCTTAGAGCTCCTTACCTTCACGAGCAGCTGGATAATCAGCTTGAAGATGATGAGTTATCTGGGAATGGATCAGGAACCGTTGTTATACGCTCTCCCAAAGGAATATCAAGGACATCTGCGTTTCGTGAGCATATCTCCCAGTCCCAGGATGAATTATCTGAGAATGGATCAGGAACTGTTGTTATTCGATCTCCGAAAGGATCAAAGCCATCTGTGTTTCGTGAGAGCTCCCAGTCCAGCAGCAGCTATGCTTCTTTTGAAGATACTTCCACAAGTGGAACTGTTGTTTTACGTAGTCAACAAGATGATTCTGATTCTCCACAGACTCCAAGGTCCCGGCTAGGACTTTATGACAGAAATTCAAATGTTTCACTTGAAGATAGTGCTGCAAACCTAGCCGAGGCAAAGGCTGCTATCCAAGGAGGGCAACGAAAAGTGAATACTCGGGAAAGGCATTCCCGGGGAAAAATCAATAGTGATAATATACAGGAAAGCAAACGAGACCAAATGACTAGCAGCACTGATTCTTCCAGATCATATCGTGAATACATTGATGCACAAAGGGGTATGGTACGATCAAATTACGCCGGTGATGAGGAAGAAAGTGCTAGAATAATATCATCCTCGGCGCCATTATCAGTTTTGCTTATTCCTTCATCAAAAGAGGCTATTGCTGATGATCCAGAAGGGCAAATCGTGCGGGCAGTTATCAATTCATTAATAAACATGGAGGGTACAAAGCCTAGATCCTCTGATGTTTTTGTCAAAAAATTGCTTCAAAGATTAGCAAGTTCAAAGGAAGATTCATTGAAGGACCTGCAAGGACTGGCAAGCCAATTATTCAGCAAAGCCAAGTCAACCGAAGAAATTCAAAATGCGGAAGCTGATAACCGAAGGAAACAACATAACAAGGAACCTCATCCAAATAGCAACTTAAGCCCTCTTGCAAGATTTCTTCTATCAAGATGGCAAGGCCAAACTTCACGGGATCTAAACCAATCTTGA 2196 0.4249 MEDLAGLVEATGSRFTSLELIGQGSFGDVYKGFDKELNKEVAIKVIDLEESEDDIDDIQKEISVLSQCRCPYITEYYGSFLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIAYILRDLLHAVDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSDGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSSCLKKVPAERPSAKELLKDRFIRNARKSPKLLERLSRERPKYQVKEDLETARNGQRGIGEGSDTMKVARDSKVDEINRSSSQGKTPKSSEWDFSIGESEGTGTFRSVSRPPQSRDKKTEGSYNQLTQRKALDTGYQGGFPNRSSFNQSLEKDLRAPYLHEQLDNQLEDDELSGNGSGTVVIRSPKGISRTSAFREHISQSQDELSENGSGTVVIRSPKGSKPSVFRESSQSSSSYASFEDTSTSGTVVLRSQQDDSDSPQTPRSRLGLYDRNSNVSLEDSAANLAEAKAAIQGGQRKVNTRERHSRGKINSDNIQESKRDQMTSSTDSSRSYREYIDAQRGMVRSNYAGDEEESARIISSSAPLSVLLIPSSKEAIADDPEGQIVRAVINSLINMEGTKPRSSDVFVKKLLQRLASSKEDSLKDLQGLASQLFSKAKSTEEIQNAEADNRRKQHNKEPHPNSNLSPLARFLLSRWQGQTSRDLNQS 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03248 731 MobiDBLite consensus disorder prediction 686 703 - -
Trre11g03248 731 Coils Coil 680 702 - -
Trre11g03248 731 Coils Coil 48 68 - -
Trre11g03248 731 FunFam serine/threonine-protein kinase dst1 isoform X1 12 301 - -
Trre11g03248 731 MobiDBLite consensus disorder prediction 288 391 - -
Trre11g03248 731 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03248 731 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Trre11g03248 731 MobiDBLite consensus disorder prediction 323 354 - -
Trre11g03248 731 MobiDBLite consensus disorder prediction 537 576 - -
Trre11g03248 731 MobiDBLite consensus disorder prediction 561 576 - -
Trre11g03248 731 MobiDBLite consensus disorder prediction 440 517 - -
Trre11g03248 731 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03248 731 CDD STKc_MST3_like 13 288 - -
Trre11g03248 731 MobiDBLite consensus disorder prediction 680 714 - -
Trre11g03248 731 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03248 731 MobiDBLite consensus disorder prediction 542 560 - -
Trre11g03248 731 SUPERFAMILY Protein kinase-like (PK-like) 13 268 IPR011009 -
Trre11g03248 731 Gene3D Transferase(Phosphotransferase) domain 1 12 301 - -
Trre11g03248 731 MobiDBLite consensus disorder prediction 308 322 - -
Trre11g03248 731 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 11 680 - -
Trre11g03248 731 MobiDBLite consensus disorder prediction 362 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03248 Trre-Chr11 44093372 44104860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03248 1 728 MAP Kinase Kinase Kinase Kinase AT3G15220 60.685 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Trre11g03248 Pkinase 8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03248 K08838 - gmx:100815042 1073.92