Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03237 ATGGAAACTTTCTACCACCACCACATCAACAACAACACCACCACCACCAACAACACCAACAATGATGCACATTTACCACCTGGTTTTCGTTTCCACCCAACAGATGAAGAACTCATAACATTCTACCTTCTCAAAAAAGTACTTGACAACACTTTCTCAGCAAGAGCCATAGCTGAAGTTGATCTTAACAAATGTGAACCATGGGAGCTACCAGAAAAAGCTAAGATGGGTGAGAAAGAATGGTACTTCTTTAGTTTACGTGACAGAAAATATCCAACGGGGTTGCGTACAAATAGAGCAACTGAAGCTGGTTATTGGAAAGCAACAGGAAAAGACAGAGAGATTTATAGCTCAAAAACTTACTCTCTTGTTGGTATGAAGAAAACCCTTGTTTTCTACAGAGGTAGAGCTCCTAAAGGTGAAAAAAGTAACTGGGTTATGCATGAATATCGTCTTGAAGGAAAATTTGCTTACCATTTTCTCTCTAGAAACTCCAAGGATGAATGGGTCATTTCACGTGTGTTTCAAAAGAGCAACACTGGAAACGGTGGCACAACCGTGTCAGCCACCACAAGTGGTTCGAAAAAGACCAAAATAGCCTCAACAAACTCTGCAAGCAACAACAGCATGAGTCTTTGTCCTGAACCAAGTTCACCTTCTTCGGTCTATCTTCCGCCTCTTCTTGATTCATCTCCTTACGCTGCCGCTAGCACCGCCGCGTTCAACGGTGGTCAAATGTGCAACTACAACAGCTCCAGCAACAACACTGAACAAAAGGAGCACGTGTCCTGTTTCTCCACAACATCTACAACATCAAATGTTGTTAACAACTTCAACAACAATAACAACAATGGAAGTTTTGATCTTGTTTCTCCTATGAATGCTAACATGGATCCTTTTGCAAGGTTCCAAAGGAATGTTGGTGTTTCTGCTTTTCCTAGCTTGAGATCACTACAAGATAATCTTCAACTTCCTTTCTTTTTCTCCCCGGCGGCCGCTCAGCCTTTTAATGGTGGTGGTGGTGGTGATTTTCTTAGTGGTTGGGGAATGCCGCCGACCGAGGATCAAAGGGTGGTGGTTGATGGTGGTGGTCATAATATGGGAGGATTGGTTTCATCTGAGCTTGATTGCATGTGGAACTATTAA 1146 0.4267 METFYHHHINNNTTTTNNTNNDAHLPPGFRFHPTDEELITFYLLKKVLDNTFSARAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTYSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHFLSRNSKDEWVISRVFQKSNTGNGGTTVSATTSGSKKTKIASTNSASNNSMSLCPEPSSPSSVYLPPLLDSSPYAAASTAAFNGGQMCNYNSSSNNTEQKEHVSCFSTTSTTSNVVNNFNNNNNNGSFDLVSPMNANMDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFSPAAAQPFNGGGGGDFLSGWGMPPTEDQRVVVDGGGHNMGGLVSSELDCMWNY 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03237 381 ProSiteProfiles NAC domain profile. 25 177 IPR003441 GO:0003677|GO:0006355
Trre11g03237 381 SUPERFAMILY NAC domain 16 177 IPR036093 GO:0003677|GO:0006355
Trre11g03237 381 Gene3D NAC domain 34 181 IPR036093 GO:0003677|GO:0006355
Trre11g03237 381 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 259 - -
Trre11g03237 381 MobiDBLite consensus disorder prediction 181 213 - -
Trre11g03237 381 FunFam NAC domain-containing protein 100-like 34 181 - -
Trre11g03237 381 Pfam No apical meristem (NAM) protein 26 152 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03237 Trre-Chr11 44027854 44030179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03237 1 381 NAC Transcription Factor Family AT5G53950 50.971 1.97e-122 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre11g03237 NAM 1.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03237 - - vun:114185732 423.705