Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03232 ATGGCTCCAAGAGACAACAACAGAGTCGTCACCACAGCAATCACTGGGCCCAACCCAACGGCCCAAGCCCAATCTCAGGCCCAAAAAGAGATCCGTTTCAGAGGCGTGAGAAAACGTCCATGGGGTCGTTACGCCGCCGAGATCCGTGACCCAGGTAAAAAGACACGTGTATGGCTAGGAACGTTTGACACAGCTGAAGAAGCGGCGCGTGCTTACGACACGGCGGCACGTGAGTTTCGTGGTTCAAAAGCAAAAACAAATTTCCCAACACCGATGGAGATTATTAATAACCGTAGCCCAAGTCAGAGTAGTACTCTTGAATCACCTTCACCACCGCCTCTTGATCTAACACTCACACCTTTCTCCGCCGCCGCCGGCCCCGGCGGCGTTACGTTGGCTTTTCCGGTTGCTCGTCCGGTTATGTTTTTTGATGCTTTTGCTCCTCCTGAAACGAAGCTTAGCCTTGTCGGTAGACGTGAGATGTGTGGATTTGATCTTCCTGTGGCTGATTTTCGACGCGCCGCCGTTCAGAGTTGTGACTCTGGTTCATCTTCCGTTGTTGATTATGAACGTGTGCCACGTCAGAGACACTTGGATCTTGATCTTAATGTTCCACCTCCACCTGAAGTTGCTTGA 636 0.5157 MAPRDNNRVVTTAITGPNPTAQAQSQAQKEIRFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPTPMEIINNRSPSQSSTLESPSPPPLDLTLTPFSAAAGPGGVTLAFPVARPVMFFDAFAPPETKLSLVGRREMCGFDLPVADFRRAAVQSCDSGSSSVVDYERVPRQRHLDLDLNVPPPPEVA 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03232 211 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Trre11g03232 211 FunFam Ethylene-responsive transcription factor 2 32 90 - -
Trre11g03232 211 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Trre11g03232 211 MobiDBLite consensus disorder prediction 89 112 - -
Trre11g03232 211 CDD AP2 32 89 IPR001471 GO:0003700|GO:0006355
Trre11g03232 211 MobiDBLite consensus disorder prediction 85 113 - -
Trre11g03232 211 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Trre11g03232 211 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Trre11g03232 211 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Trre11g03232 211 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Trre11g03232 211 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Trre11g03232 211 MobiDBLite consensus disorder prediction 8 29 - -
Trre11g03232 211 MobiDBLite consensus disorder prediction 1 30 - -
Trre11g03232 211 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03232 Trre-Chr11 43971198 43971833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03232 17 144 AP2-EREBP Transcription Factor Family AT3G15210 60.811 1.38e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre11g03232 AP2 9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03232 K09286 - gmx:100813652 218.009