Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03196 ATGGAGCAAGATATAGAAGATATTGAGTCTCAAACAATTTATAAAGAGACATTGCATGAGGAAACACCTGAATTCTTGCACAATGGAAAACGTCCGGTGATTCTTAAGTTTGATGAAGTTGTGTACAAAATCAAAGACAAAAAAGGAGGACTATTTAAGAAGAAAACAAAAGTAGAAGAGAAAACAATACTAAAAGGAGTAACAGGAATTGTTAAACCAGGTGAAATGTTAGCAATGTTAGGTCCATCAGGAAGTGGAAAAACAACATTGTTAACAGCATTAGGAGGAAGACTTGGTGGAAAACTTTATGGAAAAATAACATATAATGAAAAACCATTTTCAAATACAATAAAAAGAAACACAGGTTTTGTTACACAAGATGATGTTCTTTATCCTCATTTAACAGTAACTGAAACACTTGTTTTCACAGCACTTTTAAGATTACCAAATAGTGTTCCAAAAGAAGAGAAAATTTCACATGCAAAAAATGTTATTGATCAACTTGGTTTAACAAAGTGTAAAGATAGCATTGTTGGAAGTGCTTATCTAAGAGGTGTTTCTGGTGGAGAAAGGAAAAGAGTTAGTATTGGACAAGAATTGCTTATAAATCCTAGTTTATTGTTTCTTGATGAACCTACTTCTGGTTTGGATTCTACAACAGCTCAAAGGATTGTTTCAACTTTGTGGGATTTAGCAAGAGGTGGAAGGACTATTGTTATGACAATACATCAACCTTCAAGTAGATTATATTATATGTTTCATAAAGTTTTGTTGCTTGCAGAAGGGAATGTTGTTTATTTTGGTAAAGGGTCTGAAGCTATTGATTATTTTTCTAATATTGGTTATTCTCCTGCTATGGCTATGAACCCTTCAGATTTTCTTTTGGATCTTGCAAATGGTATCTACACTGATGAAATGAATCATGACCATAACATAGACAAGCAAAAATTGATTTCAGCATTTAAATTTAAAAGTAACTCTGAAACACAGTCCAAGCCAGAAGAACTTCAAGAAATCAATGACTCTGATACAAGTCAGGGTAGATTTCAAGAGACAGGTTCTGGAAAATGGCCTACTAGTTGGTCACAACAATTCTTTGTATTGTTAAGAAGAGATGTCAAAGAGAGAAAATATGAATCATTCTCTGGCTTGAGGATTGGTCAAGTCCTTGTGGTTGCACTTATGTCAGGACTACTTTGGTATAAATCTGATATGTCACACTTGCAGGATCAGATTGGACTACTATTCTTCATAACAGGCTTTTGGGGTTTTTTCCCTCTCTTCCAAGCAATCTTCACATTCCCACAAGAACTAATGATGCTAGAAAAAGAAAGATCCTCAGGAATGTATAGACTCTCCTCCTACTTCATTTCGAGAATGGTAGCCGACCTACCGATGGAACTAGTCCTCCCAACAATCTTCCTTCTCATATCATATTTCATGGCAGGACTCAAAGCAACAATGATAAATTTCTTTCAAACACTTTTCAGCCTCTTACTCAATGTGTTAGTTGCACAAGGTTTAGGCCTTGCACTTGGTGCTGTAGTACTTGATCAAAAATCAGCAACAACACTTGCATCAGTGATCATGCTGTGTTTCTTACTTGCTGGTGGATTTTATGTTCAGAATGTTCCAAAGTTTATTGCTTGGGTGAAGTATATTTCTATTAGCTACTATACATATCAACTATTTATTGGATCACAATATCATATTGGTGAGACATACCCTTGTTCTAGTGGACAGTGTCCTATTGAAGAGTTTCCTCCTATAAAACAAATGGGGTTTGATATCAATGGACAAGGGTTAGCTGCAATGGCTCTTGTTATAATGCTAATTGGTTATAGACTTATAGCTTATATTGCTCTTATGAGGATTGGTGTCACAAAGAAAAAGGCTTAG 1899 0.3502 MEQDIEDIESQTIYKETLHEETPEFLHNGKRPVILKFDEVVYKIKDKKGGLFKKKTKVEEKTILKGVTGIVKPGEMLAMLGPSGSGKTTLLTALGGRLGGKLYGKITYNEKPFSNTIKRNTGFVTQDDVLYPHLTVTETLVFTALLRLPNSVPKEEKISHAKNVIDQLGLTKCKDSIVGSAYLRGVSGGERKRVSIGQELLINPSLLFLDEPTSGLDSTTAQRIVSTLWDLARGGRTIVMTIHQPSSRLYYMFHKVLLLAEGNVVYFGKGSEAIDYFSNIGYSPAMAMNPSDFLLDLANGIYTDEMNHDHNIDKQKLISAFKFKSNSETQSKPEELQEINDSDTSQGRFQETGSGKWPTSWSQQFFVLLRRDVKERKYESFSGLRIGQVLVVALMSGLLWYKSDMSHLQDQIGLLFFITGFWGFFPLFQAIFTFPQELMMLEKERSSGMYRLSSYFISRMVADLPMELVLPTIFLLISYFMAGLKATMINFFQTLFSLLLNVLVAQGLGLALGAVVLDQKSATTLASVIMLCFLLAGGFYVQNVPKFIAWVKYISISYYTYQLFIGSQYHIGETYPCSSGQCPIEEFPPIKQMGFDINGQGLAAMALVIMLIGYRLIAYIALMRIGVTKKKA 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03196 632 ProSitePatterns ABC transporters family signature. 186 200 IPR017871 GO:0005524|GO:0016887
Trre11g03196 632 Gene3D - 53 280 IPR027417 -
Trre11g03196 632 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 286 IPR003439 GO:0005524
Trre11g03196 632 FunFam ABC transporter G family member 22 51 280 - -
Trre11g03196 632 CDD ABCG_EPDR 32 268 - -
Trre11g03196 632 MobiDBLite consensus disorder prediction 326 356 - -
Trre11g03196 632 MobiDBLite consensus disorder prediction 342 356 - -
Trre11g03196 632 Pfam ABC transporter 64 214 IPR003439 GO:0005524
Trre11g03196 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 279 IPR027417 -
Trre11g03196 632 SMART AAA_5 73 271 IPR003593 GO:0016887
Trre11g03196 632 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 24 619 - -
Trre11g03196 632 Pfam ABC-2 type transporter 363 569 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03196 Trre-Chr11 43462782 43467714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03196 63 300 Calmodulin-binding Proteins AT2G36910 26.016 1.45e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03196 K05681 - gmx:100816135 927.546