Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03195 ATGGGAATTCAAGAAAAAGATCCACTTTCACAATTGAGTTTACCACCTGGTTTTAGATTTTACCCAACCGATGAAGAACTTCTTGTTCAATATCTATGTCGTAAAGTTGCTGGTCATCATTTTTCTCTTCAAATTATTGCTGAAATTGATCTCTATAAATTTGACCCATGGGTTCTACCAAGTAAGGCAATTTTTGGTGAGAAAGAATGGTATTTTTTTAGTCCAAGAGATAGGAAATATCCTAATGGAACAAGACCCAATAGAGTAGCTGGATCTGGGTATTGGAAAGCTACTGGAACTGATAAGATTATCACAAATGAAGGTAGAAAAGTTGGTATCAAAAAAGCACTTGTGTTTTATGTTGGTAAAGCTCCTAAAGGCACCAAAACTAATTGGATTATGCATGAATATCGTCTACTTGACTCTTCTCGCAACAACGGCGGCACTAAGTTGGATGATTGGGTTCTATGTAGAATATACAAGAAAAATTCAAGTGCACAAAAAACCAATCCAAACGGTGTCGTTTCAAGCGGCGAATACACTCAATACAGCAATGGTTCATCTTCGTCTTCATCCTCACACCTCGATGATGTTCTCGAATCACTTCCACAGATCGATGACCGTTGTTTCATGCTTCCACGTGTCAATTCACTAAGAACTATGCAGCATCATCATCAACAACAAGAACAGAAACTGAATCTTCAAAATCTGAATTCTGCAAATAATAACAGTTTCATGGATTGGTCAAATCCATCATCAATTTTGAACACTGTAACAGATCAGTTTCAAGAAACACAAACTCAAGGAATGATGAATTTTGGTGGATGTAATGACCTTTATGTCCCTAATGTATCCACTTTATGTCAAATGGACTCTTCCGTCATCACCGACAAAACTAGTCAGATACCCGTGCATCCTACTGAAGAGGAGGTTCAGAGTGGGGCAAGAGCGAACCGAGTTGAAAATTCTAATTCTGAATTTTTTCAACGCGGTTCAAATGATTTTACTCAAGGAATGAGCTTTTCAAATTCGGTTGACCCGTTTGGGTTTAGATACCCAGTTCAACCTGTTGGATTCGGGTTCGGACAATGA 1092 0.3819 MGIQEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITNEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRNNGGTKLDDWVLCRIYKKNSSAQKTNPNGVVSSGEYTQYSNGSSSSSSSHLDDVLESLPQIDDRCFMLPRVNSLRTMQHHHQQQEQKLNLQNLNSANNNSFMDWSNPSSILNTVTDQFQETQTQGMMNFGGCNDLYVPNVSTLCQMDSSVITDKTSQIPVHPTEEEVQSGARANRVENSNSEFFQRGSNDFTQGMSFSNSVDPFGFRYPVQPVGFGFGQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03195 363 FunFam NAC domain-containing protein 72-like 23 167 - -
Trre11g03195 363 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Trre11g03195 363 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Trre11g03195 363 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Trre11g03195 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 238 - -
Trre11g03195 363 MobiDBLite consensus disorder prediction 166 197 - -
Trre11g03195 363 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03195 Trre-Chr11 43449854 43451607 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03195 1 250 NAC Transcription Factor Family AT3G15500 69.841 3.45e-121 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre11g03195 NAM 7.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03195 - - tpra:123895211 661.373