Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03191 ATGGAAAGTACCGATTCATCGACCGGTTCACAACAACCGAATCTTCCACCTGGATTCAGATTCCATCCGACCGATGAAGAGTTGGTTGTTCATTATCTCAAGAAAAAAGCAGCCTCAGCTCCTTTACCGGTAGCCATCATCGCCGAAGTTGATCTCTACAAATTCGATCCGTGGGAGCTACCAGCTAAGGCAACGTTTGGAGAGCAAGAGTGGTATTTCTTTAGTCCAAGGGATAGGAAGTATCCAAATGGTGCTAGGCCAAACAGGGCAGCAACTTCTGGTTATTGGAAAGCAACTGGTACTGATAAGCCCGTTTTAATTTCAGGTGGAACACAAAAAGTTGGTGTGAAAAAAGCTTTGGTTTTCTATGGTGGAAAACCACCAAGAGGAATCAAAACTAATTGGATCATGCATGAGTATAGGCTTGCTGATAATAAGCCTAATAATAGGCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACTCTCTAAGGCTTGATGATTGGGTGCTATGCCGAATCTACAAGAAAAGCAATACACATCGGTCACCGGTGGAACATGATAGGGAAGATTCGATGGATGATTTGATAGGCGGAGTACCTCCATCAATCAACGTGGGTCAAATGAATGCTGCAACAAGGTTTCATAACTTTTCGAAGATGTCAACAAATAGCTACAACAATGCATTGTTGGAAAATGATCAAAATTTATTAGAAGGAATGATGTTAAGCAACAACAATTTAGGAGTTTCAAATTCAAAGGCAGAGTTATCTTTTGTACCAACTATGACAACATCTTCAAATGCTAATTCACCTTCAAAGAGAACACTTTCTTCACTTTATAATTGGAATGATGAAGATGTTGCAGCTCAAGTTGGTACTTCATCATCTAACAAAAGGTTCAATTTGGAAAGTGTTGTGAGAAATGATCAAGATAATGGAACTGTTGCTACTTCTTTTGCTTCTCTTCTTAATAATCTCCCTCAAACTCCTTCATTGCATCAACAACAACAACAACAACAACAAACAATGTTGGGATCAATACCATATCAAATTCAAGGGATGAATTGGTATGGATGA 1077 0.3955 MESTDSSTGSQQPNLPPGFRFHPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLISGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPVEHDREDSMDDLIGGVPPSINVGQMNAATRFHNFSKMSTNSYNNALLENDQNLLEGMMLSNNNLGVSNSKAELSFVPTMTTSSNANSPSKRTLSSLYNWNDEDVAAQVGTSSSNKRFNLESVVRNDQDNGTVATSFASLLNNLPQTPSLHQQQQQQQQTMLGSIPYQIQGMNWYG 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03191 358 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Trre11g03191 358 PANTHER NAC TRANSCRIPTION FACTOR 56 15 241 - -
Trre11g03191 358 MobiDBLite consensus disorder prediction 1 20 - -
Trre11g03191 358 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Trre11g03191 358 MobiDBLite consensus disorder prediction 1 17 - -
Trre11g03191 358 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Trre11g03191 358 SUPERFAMILY NAC domain 7 176 IPR036093 GO:0003677|GO:0006355
Trre11g03191 358 FunFam NAC transcription factor 56 24 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03191 Trre-Chr11 43353081 43354588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03191 1 357 NAC Transcription Factor Family AT3G15510 53.067 5.23e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre11g03191 NAM 1.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03191 - - vra:106763825 570.852