Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03169 ATGTATGTATCCGCAGATACCGACCATCCTGATCCTGTCTCTGGTGGTAAATATTGCTGTGACAGAAAGGCTGTTGACTTTCCTGGGGGTAATTTTCCTAGGGGTACTCTTTGGAATCCTAAATATCGTTTTTTATCGGCTATTCCGGGCATGCTAGTACCTTCCTTCGCGTGGCCTTTTGTGGACGAGATGACTGCTAAGTCCAACGATAAAACTCTTGTGGTAAGCCATATCACACGTGAAATAAGGAAGGAAACTGATTTCCTTAAGCTTTTTGAGCCTTTCAGTGAGGTCAGCAGTGTCAAGCTTGCCCCTCTTGATCCAGAGGGTACCTGTCATGGGGGATTTGGCTTTGTTACATTTGTTAACAAGGAGGATGCTCAGAAGGCTATGGACACACTCAATGTCTCTGGCCCGCGCGGCCGCGATAATCGCACCCTTGCACTTGATTGGGCCTCCATTTTGAAAAAACCAACCTAA 480 0.4667 MYVSADTDHPDPVSGGKYCCDRKAVDFPGGNFPRGTLWNPKYRFLSAIPGMLVPSFAWPFVDEMTAKSNDKTLVVSHITREIRKETDFLKLFEPFSEVSSVKLAPLDPEGTCHGGFGFVTFVNKEDAQKAMDTLNVSGPRGRDNRTLALDWASILKKPT 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03169 159 Gene3D - 62 158 IPR012677 -
Trre11g03169 159 SUPERFAMILY RNA-binding domain, RBD 42 135 IPR035979 GO:0003676
Trre11g03169 159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 154 IPR000504 GO:0003723
Trre11g03169 159 PANTHER ATPASE E1 61 137 - -
Trre11g03169 159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 135 IPR000504 GO:0003723
Trre11g03169 159 SMART rrm1_1 72 150 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03169 Trre-Chr11 43064122 43064601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03169 45 153 Eukaryotic Initiation Factors Gene Family AT3G11400 31.933 2.27e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03169 K03248 - tpra:123898674 92.0485