Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03162 ATGGTGAAGGATTATGAATCAATCATTGCCATTAACGATCGGAAGAACAAATGGTGTTTTTTTGCCAGAATTATTGGGCTGTGGAAATGTACAGATCCAAATAATTCTGATATGCCTTTGAAAATTGACTTGGTTCTGCAGGATAACTATGGTCATAAAATAGATGCACAGATTGGTAGAGATCTGATTCCGAAATTCCATGATTGTGTGAAAGAAGATGGTGTTTACATTATGTACAATTTTCATGTTACACTCAATCATCTAGAGGTGAAGACAACAAGTCACACATATTATCTCAACTTCACTAACCATACTAGAATCAAAGTGGTTGACGATGAGACTGTACCTATGTACTCATATTTTTTCAGTCACCCATCTACATTCCTTTCAAAGAATTATAGATCAGAAAATTTGGTTGATGTCATTGGAATGCTGTCTAAAGTTGAATTTGAAGACGACTATTTCATTGAGGGTGAAATGAAAAAAATTGTATCAATGGATTTAACCAATTATGAATATCGTTATAAGTGTATTCTACATGGAGCTTTTTATGTTCAGCTGAGTGAATTTTTGCTATCTAAATCGCCAGACAATGTATGTATTGCACTGTTTTTTGGAAAGATGACATATTTGAAAGGGATACCTACTGTTCAAAATTTTGGGAAGTATACAAAGTTGATATTCAATCCAAATTATGAAGCAGCTCTAGATTTAAAGCAAAGGCTGGACATCACATTTTCACCATCTTATGGAGTATATGAAACAAATGAAACTACAGAAATGCATATATTAAAACAGTGGTTGTACTCAAACACAAGATCTACTATATATGATCTTCGTACATGTGCAATGGAGTCGATGTGTGTCATATTGGGCAAAGTTCAACCAATGCAACCTGGTCGTCATTGGTGTTATCTATCCTGTGTATGCAATATAAAGGTGATTCCTGACGGTCACAGGTATTATTGTGAGAGGTGTAATAGGCATGTTTTAATGGTCAATCACAGGTATATGATAAGCCTTCGTGTGAGTGACCCCACAGCATCGGCTACATTTGTAATGCATGATCGTATGGCTGTTGAGTTTTTTGGAATGTCATGCAGTCAAATGCTTGAAATTGATGGAAAGGATGCAGTGTCTGACTATGTCCCTGAGCCAATCTCAAAAATGGTGGGTAAATGTTATTTATTCATGGTTTTTACCAAAGTTAGTCCAGGAGATGATGCAGATAAATGCTATCCAGTTTCGAAAGTCACAGACGATGATGCACTCATACAATCATTCAAACGCCAACAATCTTTAGAATAG 1308 0.3563 MVKDYESIIAINDRKNKWCFFARIIGLWKCTDPNNSDMPLKIDLVLQDNYGHKIDAQIGRDLIPKFHDCVKEDGVYIMYNFHVTLNHLEVKTTSHTYYLNFTNHTRIKVVDDETVPMYSYFFSHPSTFLSKNYRSENLVDVIGMLSKVEFEDDYFIEGEMKKIVSMDLTNYEYRYKCILHGAFYVQLSEFLLSKSPDNVCIALFFGKMTYLKGIPTVQNFGKYTKLIFNPNYEAALDLKQRLDITFSPSYGVYETNETTEMHILKQWLYSNTRSTIYDLRTCAMESMCVILGKVQPMQPGRHWCYLSCVCNIKVIPDGHRYYCERCNRHVLMVNHRYMISLRVSDPTASATFVMHDRMAVEFFGMSCSQMLEIDGKDAVSDYVPEPISKMVGKCYLFMVFTKVSPGDDADKCYPVSKVTDDDALIQSFKRQQSLE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03162 435 Gene3D - 259 429 IPR012340 -
Trre11g03162 435 Gene3D - 121 245 IPR012340 -
Trre11g03162 435 Gene3D - 6 113 IPR012340 -
Trre11g03162 435 CDD RPA1_DBD_A_like 21 107 - -
Trre11g03162 435 SUPERFAMILY Nucleic acid-binding proteins 285 422 IPR012340 -
Trre11g03162 435 Pfam Domain of unknown function DUF223 44 114 IPR003871 -
Trre11g03162 435 CDD RPA1_DBD_C 303 422 IPR047192 -
Trre11g03162 435 Pfam Replication factor-A C terminal domain 302 397 IPR013955 -
Trre11g03162 435 SUPERFAMILY Nucleic acid-binding proteins 8 113 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03162 Trre-Chr11 43021769 43023845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03162 1 399 Core DNA Replication Machinery Family AT5G08020 19.385 3.19e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03162 - - tpra:123915062 275.404