Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03161 ATGGTGCTCATGGATTCAAAAGGTGATCGGATTCACGCTACAGTTCGTCGGACTTTAATTTATAAGTTTGAGAAGGATCTTAAGGAGGACAACGTATTTGCCATTTCTAACTTCGGTGTTGCGGCAAATATTGGTTCATATCGAACCACAAGACATCCTTATAAACTGAATTTTCAATTTGCAACAAAAATTAAAGTTTCTGAAAATCGTTCTGTCCCACCAAACTTATACTTGATTGGTAATCCAAGTGAGATTTTTTCTGGTCAGTATGATACTGACTATTTGGTTGATCTTATGGGAATGTTGACTAGGGTCGGTGTCGAGAAAACCTACGAGAGAAATGGAACACAATCCAAAATGGTTGTTATAGAGCTGGACAATGATGGATACCGTTTCAAATGTACCTTATTTGGTCCGTATGTGGACATGCTGAATTCTTTTCTTGCATCCGGAGAGACCGAGAATGTCATTGTGGTCATCCTTTTGGCTAAAGTTAAAATTTTTCAAGGTAGGGCCACTGTTCAAAACACAATATACTCAACAAAAATACTTTTCAATCCGGCGTTCTCTGTTGCAGTTGATCTGAAAAAAAGGATGGTTGAGAAAAATGATACCCCTTCGCCGGGTATAACTCGGCTGCAAGATAATCCAAAGCTTTCCTTTATGGAAGACTTTATACAAGTCAATCCATATGCAACAATTGAGGGCTTGAAAGAATCCCGTGTGGAGGGTGTGTTTGTTGTCTGTGCCACAATCAAATTCATTGTCGATGATAATGATTGGTGGTATACTGCCTGCACCTGTAACAAGAAAGTATATCCCGACGAGAGGATGTACTTTTGCGAGAAGTGTAACAAGCACGTTCTCAATGTTACCCCAAGGTATAGGATAAAGGTAAGGGTCATTGACTCATCTGATTCGGCTACATTTGTAATCTTTGATCGTGATGGTGTTGATTTATTCAACATGACCTGTGCTGACATGATAGAATCAGTTGGAATGGATGCAAATTCTACTGGAATTCCAAAACTCATACTTGATTTGGTTGATAAGACCTATATCTTCAAGGTTGAGACAAATATTAGTGAGGAGACGAGATATGAGAAATCATATCGTGTGAAGAAGATGACTGCTGATGTTGAAGTTATGGCTAAATTTAATGCCAAATACTCTATTCCTCAGGTTGATACTGTTTGTGATGAGGTTTCCATTGGTAAGGTTGTTGATCTTGATGCTAAAGTGACTAACTCTACTGCAGATTCTGTTGCTCAGGATCTGATGGAAAAATTTAGTGATCAGGTAGAGGATATTGGGGCAAACACTATAGATCTCACTGCAGAAGTGAATGATTTGGAAACAAATAAGAGAGATTTTTCTTTTTTGGCTTCAACTTCTGATGCTGACAAGAAAGAGCCTGTGATGAAGCAAGTGAAAATTGTGAAAGATTGA 1449 0.3844 MVLMDSKGDRIHATVRRTLIYKFEKDLKEDNVFAISNFGVAANIGSYRTTRHPYKLNFQFATKIKVSENRSVPPNLYLIGNPSEIFSGQYDTDYLVDLMGMLTRVGVEKTYERNGTQSKMVVIELDNDGYRFKCTLFGPYVDMLNSFLASGETENVIVVILLAKVKIFQGRATVQNTIYSTKILFNPAFSVAVDLKKRMVEKNDTPSPGITRLQDNPKLSFMEDFIQVNPYATIEGLKESRVEGVFVVCATIKFIVDDNDWWYTACTCNKKVYPDERMYFCEKCNKHVLNVTPRYRIKVRVIDSSDSATFVIFDRDGVDLFNMTCADMIESVGMDANSTGIPKLILDLVDKTYIFKVETNISEETRYEKSYRVKKMTADVEVMAKFNAKYSIPQVDTVCDEVSIGKVVDLDAKVTNSTADSVAQDLMEKFSDQVEDIGANTIDLTAEVNDLETNKRDFSFLASTSDADKKEPVMKQVKIVKD 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03161 482 CDD RPA1_DBD_C 235 380 IPR047192 -
Trre11g03161 482 SUPERFAMILY Nucleic acid-binding proteins 236 365 IPR012340 -
Trre11g03161 482 CDD RPA1_DBD_B_like 97 199 - -
Trre11g03161 482 CDD RPA1_DBD_A_like 1 64 - -
Trre11g03161 482 Gene3D - 1 69 IPR012340 -
Trre11g03161 482 Pfam Domain of unknown function DUF223 1 95 IPR003871 -
Trre11g03161 482 SUPERFAMILY Nucleic acid-binding proteins 1 71 IPR012340 -
Trre11g03161 482 Gene3D - 81 207 IPR012340 -
Trre11g03161 482 SUPERFAMILY Nucleic acid-binding proteins 90 198 IPR012340 -
Trre11g03161 482 Gene3D - 226 389 IPR012340 -
Trre11g03161 482 Pfam Replication factor-A C terminal domain 246 381 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03161 Trre-Chr11 43017863 43020533 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03161 3 383 Core DNA Replication Machinery Family AT4G19130 22.785 8.26e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03161 - - tpra:123887545 521.546