Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03144 ATGATGTTATCACCTTCACCATCTGCTATTGCAAGAAGCTCTTTAGAAGAGATGCTTGATTCTCTTCGTCGGAGAGACGAAGAGGAGAAGCCTAAAGACCTACCGCCGGCATTGCCATCAAGGCCTATGTCAAGAGGCAGGTTGCCGCCGGCGAAAAGGTCTTTGCCTAAAAGCTTTAAGGTTGATGGAGAAAATGAAAAGGAAAAAATGGGGCATAGAAGGAGAGGAAGTTTTGGAAGCAAGAAGTTAATGTTGGATTGGGAATCTCCTTATGTTGTTGTTTCAGAAGAGCATACTGTTGTTACTACTAGTGAACAACAATCTTCACCTGGTCCTGTTTCTTCAATTCCTGCTGATGATTCTTCTGTTGCTCCACCTTCTCCGGAATTGGAAGATGACAATGTTTCTTATTTCATCAAAAAGAAACTTCATGTTTGGTGTAGGCAACCAAAAGGAAAGTGGGGACTGGGAACAATACAGTCAACTTCGGGAGAACAAGCATCTGTTTCACTCTCAAATGGAAATGTTATGGAAGTGGCCAGAACCGAGCTCCTACCAGCTAATCCTGATATTTTAGAGGGTGTGGATGATCTTATACAGCTCAGCTATTTGAATGAGCCATCAGTTCTTCACAATCTTCGGTTTAGATATTCTCAAGACATGATTTATAGTAAAGCAGGGCCGCTTTTAATTGCGCTCAATCCCTTCAAAGATGTACCGATTTATGGAAACGAATATGTCGCTGCTTATAGAAAGAAATCTCTTGATAGTCCTCACGTTTATGCAATGGTAGATGCAGCTTATAATGAGATGATAGGAGAAGAAGTAAATCAGTCCATTATCATAAGTGGCGAGAGTGGAGCTGGGAAAACAGAAGCAGCAAAAATTGCGATGCAATACTTAGCTGCTCTTGGTGGTGGCAGTTGTGGGATAGAAAATGAAGTTCTTCAGACAAATGTTATACTAGAAGCTTTTGGCAATGCAAAAACTTCTAGGAACGACAACTCTAGTAGATTTGGGAAGTTGATTGAAATTCATTTCAGCGCAACTGGTAAAATGTGTGGGGCTAAAATTCAAACCTTTCTACTAGAAAAGTCAAGAGTTGTTCAACTGGCTGATGGCGAGAGGTCTTATCACATATTTTATCAACTTTGTGCCGGATCGTCACCTCATCTTAAAGAGAGACTAAATCTTAGAGCGGCCAGCGAATATAAATATCTTAATCAAAGCGACTGCATGGCAATTGATGGTGTTGATGACGCAAAAAAGTTTCATAGGCTGAGGAAAGCCTTGGATGTCGTTCAAATGTGCAAAGAGGATCAAGAACGGGTCTTTAAGATGCTCACTGCAATATTATGGCTTGGAAATATATCTTTCGAAGTTAATGATAATGACAATCACATTGAAGTGGTAAACGATGAAGCTGTAACCAGTGCTGCTTCGCTGATGGGTTGCAGTCCTCAAGGACTAATGACAGTATTATCTACTCATAAAATCCAAGCGGGCAAGGATACTATCACCAAAACATTGACATTCCGACAGGCAATTGATGCAAGAGATGCATTAGCAAAATTTATCTATGCAAGCTTGTTTGATTGGCTAGTTGAGCAAGTTAACAAGTCGCTTGAAGTGGGAAAACGACGTACCGGAAGATCGATAAGTATCCTCGATATTTACGGATTTGAGTCATTCCAGAAAAACAGCTTTGAACAGTTATGCATAAACTATGCCAATGAGAGGCTTCAACAACATTTCAATCGGCATCTGTTTAAACTGGAGCAGCAGGACTACGAAATAGATGGCGTTGATTGGACCAAAGTAGATTTTGAGGACAATCAAGAGTGTTTGGATCTCATTGAGAAGAAGCCTATAGGGCTACTCTCGCTGTTGGACGAGGAATCAAATTTTCCAAGGGCCATTGATCTAACACTTGCCAACAAACTCAAGCAGCACCTGCAAACTAATCCTTGCTTCAAAGGGGACTGGGGAAGAGGTTTCAGTGTTTGTCATTATGCAGGCGAGGTTTTGTATGATACAAGTGGCTTTCTAGAAAAGAACAGAGATCCAATGCCTTCCGATTCCATTCAACTATTATCATCATGTAGTTGCGAACTGCTGCAGTCGTTCTCCAAGACGCTTAACCAGTCTCAGAAGCAATCAAATTCTCAGCACGTAGGTGCTTTTGATTCGCAAAAGCAGAGTGTTGGCACGAAGTTCAAGGGTCAACTATTCAAGTTAATGCATCAGTTGGAGGGCACGACGCCTCACTTTATTCGCTGTATAAAGCCAAATGCAAAGCAACATCCTGGAATATATGATGAAGATCTTGTTCTCCAGCAACTCAAGTGTTGTGGAGTTTTGGAGGTTGTTAGAATTTCAAGGGCCGGATATCCTACTCGAATGACACATCAAGAGTTTGCCAGAAGGTATGGATTTCTGCTCTATGAGGCCAACACATCTCAAGATCCGTTGAGTGTCTCGGTTGCTGTTTTGCAACAGTTTAATATCCCTCCTGAAATGTACCAAGTTGGCTTCACCAAACTGTATCTTCGAACAGGGCAGGTTGGTGCACTCGAGGATAAGAGGAAACTGGTTTTGCAGGGAACACTCGGGGTTCAAAAATACGTTCGTGGTCAGCAAGCTCGCAATCATTACAATAAACTTAAGGAAGGAGTGACCATTTTACAATCATTTGTTCGTGGAGAAATTGCAAGAAGGAAATATGGTGTTATGGTGAAGTCTTCTATAACTATTTCTTCTGAAAATATCGAGGAGATACAGGCTATCATAACACTACAATCTGTAATTCGTGGATGGTTGGTTCGAAAGCATAATAGTAGCTTGAATAAGTTTAAGAAACATCCTGAGAATGGAAGATCTAGGCGAAGGTCACGTTCGAAGATGTCAGACGACAAGGATGCGAAAGATCGGGTGCAAAATCTGCCTTCGGCTTTAGCAGAACTTCAAAGGCGGGTTGTCAAGGCCGAATCAACTATAGAGCAAAAAGAAGAGGAAAATGCCGAGTTGAGGGAACAGCTAAAACAATTTGAGAAAAGATGGATTGAATACGAGAAAAAGATGAAAACAATGGAGGAAATGTGGCAAAGACAAATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAAAACCAGCCTTGCTTCTGAGAATACCAATGGTCAACCTTCAAGACATGATGTAGCATCACCATCGCCTTTCTTTTATGATTCCGAGGATGCTATTTCGATGGGATCTCGAACGCCTCGAACGCCCGGTTGCAGCACACCTTTGAAGTATTCTAGTAGTCTTTCTGAAATCAGAGCAATGAGAGACGGTAACGGTTCATTGAACAATTTGATGAAAGAGTTCGAGCAGCGCAGACAGACATTCGACGACGATGCAAGAGCTTTGGTTGAAGTTAGACCAACAGGGCAATATGCGAATCCGAATTCCATTGATGAACTGAGAAAACTCAAACACAAATTTGAAGGATGGAAGAAAGAATACAAGACACGGTTAAGGGAGACGAAAGCAAGACTTAAGTTAGGGAATTCGGAAATGGATAAAAGCCGGCGAAAATGGTGGGGGAAATTGAGTTCTAGAGTACAACAATAA 3612 0.4161 MMLSPSPSAIARSSLEEMLDSLRRRDEEEKPKDLPPALPSRPMSRGRLPPAKRSLPKSFKVDGENEKEKMGHRRRGSFGSKKLMLDWESPYVVVSEEHTVVTTSEQQSSPGPVSSIPADDSSVAPPSPELEDDNVSYFIKKKLHVWCRQPKGKWGLGTIQSTSGEQASVSLSNGNVMEVARTELLPANPDILEGVDDLIQLSYLNEPSVLHNLRFRYSQDMIYSKAGPLLIALNPFKDVPIYGNEYVAAYRKKSLDSPHVYAMVDAAYNEMIGEEVNQSIIISGESGAGKTEAAKIAMQYLAALGGGSCGIENEVLQTNVILEAFGNAKTSRNDNSSRFGKLIEIHFSATGKMCGAKIQTFLLEKSRVVQLADGERSYHIFYQLCAGSSPHLKERLNLRAASEYKYLNQSDCMAIDGVDDAKKFHRLRKALDVVQMCKEDQERVFKMLTAILWLGNISFEVNDNDNHIEVVNDEAVTSAASLMGCSPQGLMTVLSTHKIQAGKDTITKTLTFRQAIDARDALAKFIYASLFDWLVEQVNKSLEVGKRRTGRSISILDIYGFESFQKNSFEQLCINYANERLQQHFNRHLFKLEQQDYEIDGVDWTKVDFEDNQECLDLIEKKPIGLLSLLDEESNFPRAIDLTLANKLKQHLQTNPCFKGDWGRGFSVCHYAGEVLYDTSGFLEKNRDPMPSDSIQLLSSCSCELLQSFSKTLNQSQKQSNSQHVGAFDSQKQSVGTKFKGQLFKLMHQLEGTTPHFIRCIKPNAKQHPGIYDEDLVLQQLKCCGVLEVVRISRAGYPTRMTHQEFARRYGFLLYEANTSQDPLSVSVAVLQQFNIPPEMYQVGFTKLYLRTGQVGALEDKRKLVLQGTLGVQKYVRGQQARNHYNKLKEGVTILQSFVRGEIARRKYGVMVKSSITISSENIEEIQAIITLQSVIRGWLVRKHNSSLNKFKKHPENGRSRRRSRSKMSDDKDAKDRVQNLPSALAELQRRVVKAESTIEQKEEENAELREQLKQFEKRWIEYEKKMKTMEEMWQRQMASLQMSLAAAKTSLASENTNGQPSRHDVASPSPFFYDSEDAISMGSRTPRTPGCSTPLKYSSSLSEIRAMRDGNGSLNNLMKEFEQRRQTFDDDARALVEVRPTGQYANPNSIDELRKLKHKFEGWKKEYKTRLRETKARLKLGNSEMDKSRRKWWGKLSSRVQQ 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03144 1203 MobiDBLite consensus disorder prediction 949 977 - -
Trre11g03144 1203 MobiDBLite consensus disorder prediction 17 35 - -
Trre11g03144 1203 MobiDBLite consensus disorder prediction 102 116 - -
Trre11g03144 1203 ProSiteProfiles IQ motif profile. 867 893 IPR000048 GO:0005515
Trre11g03144 1203 Gene3D - 870 915 - -
Trre11g03144 1203 PANTHER MYOSIN 186 1193 - -
Trre11g03144 1203 MobiDBLite consensus disorder prediction 1183 1203 - -
Trre11g03144 1203 Gene3D Myosin VI head, motor domain, U50 subdomain 433 541 - -
Trre11g03144 1203 ProSiteProfiles IQ motif profile. 888 917 IPR000048 GO:0005515
Trre11g03144 1203 Gene3D - 376 432 - -
Trre11g03144 1203 MobiDBLite consensus disorder prediction 1 77 - -
Trre11g03144 1203 FunFam Myosin heavy chain 376 432 - -
Trre11g03144 1203 Pfam IQ calmodulin-binding motif 892 908 IPR000048 GO:0005515
Trre11g03144 1203 Pfam IQ calmodulin-binding motif 927 944 IPR000048 GO:0005515
Trre11g03144 1203 MobiDBLite consensus disorder prediction 57 73 - -
Trre11g03144 1203 Pfam Myosin head (motor domain) 195 851 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre11g03144 1203 Gene3D Kinesin motor domain 192 796 IPR036961 -
Trre11g03144 1203 ProSiteProfiles IQ motif profile. 925 954 IPR000048 GO:0005515
Trre11g03144 1203 SMART MYSc_2a 187 864 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre11g03144 1203 MobiDBLite consensus disorder prediction 102 129 - -
Trre11g03144 1203 FunFam Myosin IE heavy chain 433 541 - -
Trre11g03144 1203 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 140 189 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre11g03144 1203 PRINTS Myosin heavy chain signature 277 302 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre11g03144 1203 PRINTS Myosin heavy chain signature 320 347 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre11g03144 1203 PRINTS Myosin heavy chain signature 552 580 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre11g03144 1203 PRINTS Myosin heavy chain signature 605 633 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre11g03144 1203 PRINTS Myosin heavy chain signature 223 242 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre11g03144 1203 ProSiteProfiles Myosin motor domain profile. 193 863 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre11g03144 1203 MobiDBLite consensus disorder prediction 962 977 - -
Trre11g03144 1203 Gene3D - 797 865 - -
Trre11g03144 1203 Gene3D - 564 753 - -
Trre11g03144 1203 SMART iq_5 924 946 IPR000048 GO:0005515
Trre11g03144 1203 SMART iq_5 864 886 IPR000048 GO:0005515
Trre11g03144 1203 SMART iq_5 887 909 IPR000048 GO:0005515
Trre11g03144 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 912 IPR027417 -
Trre11g03144 1203 Coils Coil 985 1033 - -
Trre11g03144 1203 FunFam Unconventional myosin-XIX 564 753 - -
Trre11g03144 1203 CDD MYSc_Myo8 207 851 IPR036022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03144 Trre-Chr11 42755364 42764272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03144 1 1196 Myosins gene family AT5G54280 61.805 0.0 1537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03144 K10357 - gmx:100819335 1907.11