Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03143 ATGACCACGCAGAACCTAAATTGCCGCGTATGTGTGTATGTGGTTGTGTTCTTGAACCTCTTAAGCCTTATCCCATTTCTCGGGAGGGGGGATGTTAATCCTCGTTTCATGGGTGTCTATATACCTCACTTCATGTGGCATTTTGTAAACGAGATGATTATGTTCGATGATAAAACTGTTGTGGTACTCAAGCTGTGGCATGTAATAAAGGACGAAACTAGTTTGCTCGAGCATTTTAAGCCTTTTGGTGAGGTGATCAGGGCCAAGATTGTTGTTATTGATGCAGAGAGTAACAATTTTGGGTATATTGGCTTTGTTACCTTTGTCAACAAGGAAGATGCTCATAAGGCTATTGACAAATTCAATGGCTCTTCTATTGCCGAGGATAACTGCATCCTTAAAGTTGATTTGGTCCTCACCCCAAACAAATCAACCTAA 438 0.411 MTTQNLNCRVCVYVVVFLNLLSLIPFLGRGDVNPRFMGVYIPHFMWHFVNEMIMFDDKTVVVLKLWHVIKDETSLLEHFKPFGEVIRAKIVVIDAESNNFGYIGFVTFVNKEDAHKAIDKFNGSSIAEDNCILKVDLVLTPNKST 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03143 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 140 IPR000504 GO:0003723
Trre11g03143 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 126 IPR000504 GO:0003723
Trre11g03143 145 Gene3D - 49 138 IPR012677 -
Trre11g03143 145 SUPERFAMILY RNA-binding domain, RBD 71 142 IPR035979 GO:0003676
Trre11g03143 145 SMART rrm1_1 59 136 IPR000504 GO:0003723
Trre11g03143 145 CDD RRM_SF 71 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03143 Trre-Chr11 42734997 42735966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03143 38 136 Eukaryotic Initiation Factors Gene Family AT5G06000 33.019 4.71e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03143 K03248 - tpra:123898674 69.3218