Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03141 ATGGCATTGATGGCAGCAAGCTCAGCAACTGTTGTTAAGCAAACTCCTTTCCTTGGTCAAAGGAAGGGTGCCAATCCTCTTAGAGATGTTGTCGCCATGGGAACTTCTAAAGTTACTATGGGAAATGAATTGTGGTATGGACCAGACAGAGTGAAATATTTGGGACCATTTTCAGCTCAGACACCTTCATACTTAACCGGAGAATTCCCCGGTGATTATGGATGGGACACTGCTGGTTTATCTGCTGATCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTGATTCATGGGAGATGGGCTATGCTAGGAGCACTAGGATGCATCACACCAGAAGTACTTGAAAAATGGGTGAGAGTTGACTTCAAAGAACCAGTTTGGTTCAAAGCAGGATCACAAATATTCTCAGAAGGTGGACTTGACTACTTAGGAAACCCAAACCTTGTACATGCACAAAGCATCTTAGCAGTACTAGGTTTCCAAGTTGTTCTAATGGGACTTGTTGAAGGATTCCGCATCAACGGTCTTCCTGGTGTTGGAGATGGCAACAATCTTTACCCTGGTGGCCAATACTTTGACCCTCTTGGTCTTGCTGACGATCCAGTCACTTTTGCCGAACTTAAAGTGAAGGAAATCAAGAATGGAAGATTGGCTATGTTTTCAATGTTTGGTTTCTTTGTTCAAGCTATTGTTACTGGTAAAGGACCTTTGGAGAATCTTTTGGATCACATTGATAACCCTGTTGCTAACAATGCTTGGGTTTATGCTACCAAGTTTGTACCTGGTGCTTAA 792 0.4331 MALMAASSATVVKQTPFLGQRKGANPLRDVVAMGTSKVTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANNAWVYATKFVPGA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03141 263 FunFam Chlorophyll a-b binding protein, chloroplastic 52 256 - -
Trre11g03141 263 Gene3D Chlorophyll a/b binding protein domain 52 256 - -
Trre11g03141 263 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 12 262 IPR001344 GO:0009765|GO:0016020
Trre11g03141 263 Pfam Chlorophyll A-B binding protein 62 229 IPR022796 -
Trre11g03141 263 SUPERFAMILY Chlorophyll a-b binding protein 44 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03141 Trre-Chr11 42719125 42720271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03141 8 262 Chloroplast and Mitochondria Gene Families AT2G05070 67.669 9.00e-124 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03141 K08914 - vvi:100260599 507.679