Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03137 ATGTTACAACAACCGCAACCACCGCCTCTTCCCGCCGTCAGGGCACGCTGCGCCGGTTGCCGGACATACTTTCACGCGGCGCAAGGTGTCACAGAGTTACCATGTCCTAACTGTCAAATGCCACACGTTTTCTCAATCGATCCCGCTGCTATTCGCTGTCCCGCTTGTAGAGCTCTCGTTAACGGACCTAGTAACCTCGCGAAGTTCCCTTGTCCTCAGTGTCGCGTCGAACTCGATCTTCATGTTGATGGTGAAGACGTCAATGAGCTGCTTAATGAGGTGGAGCAAGATGAAGATGATGGTGGTATGGCTGGAGAAACATTTACAGATTACCGGCCAGCAAAGCTATCCATCGGACCTCCACACCCAGATCCGATTGTGGAAACATCTTCCTTGTCTGCAGTGCAACCACCTGAGCCTACTTATGATCCAAAGATTAAGGATGAGTTGCAATGTTTGAAGACTTTGTCATGCTTGCAGATTGAGACTTTGGTCTATGCTTGTCAGAGACACCTTCAACACATTCAAAATGGTGCTAGGGCTGGATTCTTTATTGGAGATGGAGCGGGTGTAGGCAAAGGTCGAACAGTTGCTGGGCTGATCTGGGAGAACTGGCACCATGAGAGGAAGAAAGCCTTGTGGATTTCTGTTGGTTCCGACTTGAAGTTTGATGCCAGAAGAGATTTGGATGATATGGGTGCAAGTTGCATCGAAGTGCATGCTTTGAACAAGCTTCCTTATTCTAAGCTTGACACGAAGAATGTTGGAGTTAAGGAGGGAGTTATTTTCTTGACATACAGTAGCCTCATAGCATCATCTGACAAAGGCCGTTCCCGTATGCAACAGCTTGTGCAGTGGTGTGGTCCTAAGTTTGACGGTCTTATAATTTTTGATGAGTGTCATAAAGCAAAAAATTTGGTTCCCGAAAAGGGTAAGCAGCCAACAAGAACCGGTGAAGCAGTACTTGATATCCAGGCTCAACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCTACTGGTGCATCTGAACCTCGCAATATGGCTTATATGGTTCGACTTGGCCTCTGGGGAGATGGGACCTATTTTCGTGATTTTGGTGATTTTCTAGGTGCTCTTGAAAAAGGGGGTGTTGGAGCTCTAGAGCTAGTTGCAATGGACATGAAAGCAAGGGGCATGTATTTATGTCGCACGCTTAGCTACAAGGGTGCTGAGTTTGAAATTGTTGAAGCAACATTAGACGATAAAATGATGAATTCGTATAAAAAGGCTACAGAAGTTTGGGTGGATTTGCGTGAGAAATTGCTTTCTGCCATTGCCCTCCTACCCGAGAAACCTAATACTAGACTACTATGGAGATTATACTGGGCAACCCACCAGCGATTCTTTAGACACTTATGTATGTCTGCTAAAGTCCCAAGTGCAGTGAGACTTGTGAAACAAGCATTAAGGGAAGACAAGTGCGTAGTCATCGGTCTGCAGAGTACCGGTGAAGCAAGGACGGAGGATGCTGTTTCGAAATATGGCTCTGAACTTGATGACTTTATTTCTGGACCTCGTGAGTTAATGCTAAAATATGTTGAAGATTATTACCCTTTGCCAAAAAAGCCTGAACTTCTCCCAGATGATGGTGTAAAGGAGCTTCAAAGGAAGAGGCACTCTGCAAGTCCTGATGTTTCAGGAAAATCTAGAGCCAGAAAAGTGGCTAAGAGGCCGAATCCTAGTGATTCTGACAGTGATGAAGAATCTGAAACTGCCTCTGATGTTGAATCTTCCGACTCTGATTATGACGAGTTTCAGAAATGTGAAATTTGCAGTACTGAAGAGGAACGAGAAAACTTGTTGCAGTGTTCCCTCTGTGGAAAATACGCTCACCAATCATGCGTGGTGCCCCCAATTCGCGATATTATTCTTAAGGAATGGGCATGTAATTTGTGCAAGAATAAAACTGTTGAATATCTCCCTCCTAGAACAAACATAATTGAACAGCAGAAGAGTTATGATACAGCCATCGATAGCAAGAAAAAAATATTAGAGACGGTCCGTGCTTTGGATCTTCCAAACAATCCCTTGGATGATATTATTGACCAGTTAGGAGGCCATGACAAGGTTGCAGAAATTACAGGAAGGAAAGGAATGCTTGTGAGGGCTCCTAGTGGAATGGGTGTGGTTTATCAGACTCGAAATACAAAAGATGTCACTGCTGAGATGGTCAACATGAATGAAAAAAAGCTCTTTATGGAAGGTAAGAAGTTAGTGGCTATCATCTCTGAAGCTGGATCAGCTGGCGTTTCGTTGCAGGCAGACAGAAGAGTGAGAAATCAGAAAAGAAGGGTTCATTTAACTCTAGAACTTCCATGGAGTGCCGATCGAGCAATTCAGCAGTTTGGAAGAACTCATAGATCAAATCAAGTCTCGGCACCAGAATACAGGTTACTATTTACCAACCTTGGTGGAGAACGCCGGTTTGCATCAGCTGTTGCTAAGAGATTAGAATCCCTTGGAGCTTTGACTCAAGGGGATCGAAGGGCTGGACCTTCATTAAGTGCATATAATTATGATAGTGCTTATGGGAAGCGAGCTCTGATGGTTTTGTACAGAGGAATAATGGAGCTGGATCCTCTTCCCGTTGTACCTCCGGGATGCTTATCTGACAGACCCGATACAATCAAACATTTTATTAAGCAAGCAAAAGCTGCTCTTGCTTCTGTTGCAATTTTTAAGGACGCCAATCTTGGAGATGATATAGATCCTAGATGGTTATCTTGCCACATTGATGATAAAGATATCCATGATATTGGACGATTTCTCAACCGGATTTTGGGCATAGCTCCTGAGACTCAGAATAGGTTATTTGAGGTATTTGTGAAAATCTTGGATCTTCTTGTTCAAAAAGCTCGCATTGAAGGTAATCTTGACACAGGCATTGTTGACTTGAAAGCTAATGTCATTAAACTGAAAGGGACTCCAAAGAATGTCTATGTTGATCAAATGAGCGGGGCTTCAACTGTTCTGTACACATTCATCTTGGATCGTGGGGTTTCATGGGAGTTGGCAAATACCATGCTGAATGAGAAGCAAAACGCTGGATTTGGTTCATCCAGTGATGGCTTCTACAAGTCCAAGAGGGAGTGGTTGGGAAAACATCATGTTATTTTAGCATTTGAAAGTTCTGCTCCGGCTATGTATAAGATAGTTCGTCCCACTACCGGAGAATCACCTCGGGATATGCATCTGGCAGAATTAAATAGAAAATATTCAAAAGTTTCATCTTTAGAGGCGGCCAAAATTGGTTGGGAGGACGACTATGAAGCTTCATCTAAACGGTGCATGCATGGTCCAAACTGTAAACTCGGTAAATTCTGTTCAGTTGGCTCAAGACTACAGGAAGTAAATGTCTTAGGTGGTGTCATTCTTCCTATTTGGGGAAAAATACAAATGGCTCTTTCTAAGCAGGTCCGACAAATTCATAAGAGGTTACGCATTGTTCGTGTTGAAACTACATCAGATAACAGACATATAGTTGGGCTTCTTGTACCTAATGCAGCAGTTGATACTGTGCTTGAAGGTTTACATTGGCCTATAGAACTGGATGATTGA 3597 0.4359 MLQQPQPPPLPAVRARCAGCRTYFHAAQGVTELPCPNCQMPHVFSIDPAAIRCPACRALVNGPSNLAKFPCPQCRVELDLHVDGEDVNELLNEVEQDEDDGGMAGETFTDYRPAKLSIGPPHPDPIVETSSLSAVQPPEPTYDPKIKDELQCLKTLSCLQIETLVYACQRHLQHIQNGARAGFFIGDGAGVGKGRTVAGLIWENWHHERKKALWISVGSDLKFDARRDLDDMGASCIEVHALNKLPYSKLDTKNVGVKEGVIFLTYSSLIASSDKGRSRMQQLVQWCGPKFDGLIIFDECHKAKNLVPEKGKQPTRTGEAVLDIQAQLPEARVVYCSATGASEPRNMAYMVRLGLWGDGTYFRDFGDFLGALEKGGVGALELVAMDMKARGMYLCRTLSYKGAEFEIVEATLDDKMMNSYKKATEVWVDLREKLLSAIALLPEKPNTRLLWRLYWATHQRFFRHLCMSAKVPSAVRLVKQALREDKCVVIGLQSTGEARTEDAVSKYGSELDDFISGPRELMLKYVEDYYPLPKKPELLPDDGVKELQRKRHSASPDVSGKSRARKVAKRPNPSDSDSDEESETASDVESSDSDYDEFQKCEICSTEEERENLLQCSLCGKYAHQSCVVPPIRDIILKEWACNLCKNKTVEYLPPRTNIIEQQKSYDTAIDSKKKILETVRALDLPNNPLDDIIDQLGGHDKVAEITGRKGMLVRAPSGMGVVYQTRNTKDVTAEMVNMNEKKLFMEGKKLVAIISEAGSAGVSLQADRRVRNQKRRVHLTLELPWSADRAIQQFGRTHRSNQVSAPEYRLLFTNLGGERRFASAVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMVLYRGIMELDPLPVVPPGCLSDRPDTIKHFIKQAKAALASVAIFKDANLGDDIDPRWLSCHIDDKDIHDIGRFLNRILGIAPETQNRLFEVFVKILDLLVQKARIEGNLDTGIVDLKANVIKLKGTPKNVYVDQMSGASTVLYTFILDRGVSWELANTMLNEKQNAGFGSSSDGFYKSKREWLGKHHVILAFESSAPAMYKIVRPTTGESPRDMHLAELNRKYSKVSSLEAAKIGWEDDYEASSKRCMHGPNCKLGKFCSVGSRLQEVNVLGGVILPIWGKIQMALSKQVRQIHKRLRIVRVETTSDNRHIVGLLVPNAAVDTVLEGLHWPIELDD 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03137 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 364 IPR027417 -
Trre11g03137 1198 ProSiteProfiles Zinc finger PHD-type profile. 598 648 IPR019787 -
Trre11g03137 1198 MobiDBLite consensus disorder prediction 546 593 - -
Trre11g03137 1198 CDD PHD_SF 601 645 - -
Trre11g03137 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 848 IPR027417 -
Trre11g03137 1198 FunFam Protein strawberry notch homolog 2 153 352 - -
Trre11g03137 1198 Pfam C-terminal domain on Strawberry notch homologue 688 977 IPR026937 -
Trre11g03137 1198 Gene3D - 156 352 IPR027417 -
Trre11g03137 1198 Pfam PHD-finger 601 648 IPR019787 -
Trre11g03137 1198 MobiDBLite consensus disorder prediction 578 592 - -
Trre11g03137 1198 PANTHER STRAWBERRY NOTCH-RELATED 66 1191 IPR026741 GO:0006355
Trre11g03137 1198 MobiDBLite consensus disorder prediction 546 577 - -
Trre11g03137 1198 SUPERFAMILY FYVE/PHD zinc finger 587 650 IPR011011 -
Trre11g03137 1198 SMART PHD_3 600 646 IPR001965 -
Trre11g03137 1198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 560 652 IPR013083 -
Trre11g03137 1198 Pfam P-loop containing NTP hydrolase pore-1 121 421 IPR039187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03137 Trre-Chr11 42660760 42677747 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre11g03137 AAA_34 2.7e-132 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03137 K26273 - gmx:100808670 1777.68