Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03127 ATGTGGGGTTGTCAAGAAAATTTAATGCCTGTTTTTGATAATTATGGAGCATTTGATCAAATTGTGTCACTTGATTGTGATACTATGTCTTCCTCTGGTGCTTGGATACATCCGAATTTCGTCGAGCAACAAGATTTTGCGGTTCCGGCTTTGTTGTCGGATTGTAAATTGGGATTTTATGGTGGAGGGATTCCGAATTTTAATGGAAGATATAATAATCAGCCACCTATTGGTCATGAGTTTGTAGAAGATCAATGTTGTGGTTTTGTTGAAGATATTAAACCACCTCCACCTTATCCTAATGTTGCAAGAGAAAATTGGGGGATACAAAGTAATCAAATAACAACGGTTGAAGAACCAAACATAAAGGTGGGAAGGTACTCAGAAGAAGAAAGGAAAGAAAGAATTCTTCGATATTTGAAGAAAAGAAATCAAAGAAATTTCAACAAAACTATCAAGTATGCATGTCGGAAAACTTTAGCTGATAGAAGAGTGAGAGTGAGAGGAAGGTTTGCAAGGAACAATGAGATATGTGAAGAAGATCACATGGCCACAAAAAAGCTTGAGAATCATCATGATGATCACATCAATGATGACTTTTATGGTTCTGATTCATTCCAGTTCCAGTTAAAGAATGAGGAGGAGGACTGGCTTCAAGAGGCTATGGCAAGTTTGGTGTATTTATCTCATTCATCACCGGATGATATGTGA 711 0.3713 MWGCQENLMPVFDNYGAFDQIVSLDCDTMSSSGAWIHPNFVEQQDFAVPALLSDCKLGFYGGGIPNFNGRYNNQPPIGHEFVEDQCCGFVEDIKPPPPYPNVARENWGIQSNQITTVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNEICEEDHMATKKLENHHDDHINDDFYGSDSFQFQLKNEEEDWLQEAMASLVYLSHSSPDDM 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03127 236 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515
Trre11g03127 236 Pfam CCT motif 132 174 IPR010402 GO:0005515
Trre11g03127 236 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 90 185 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03127 Trre-Chr11 42463721 42465698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03127 110 184 C2C2-CO-like Transcription Factor Family AT5G15850 38.667 8.57e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre11g03127 CCT 6.7e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03127 - - cam:101492034 391.734