Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03126 ATGCCCCTATCTCCTTTTTTCATGGCTTCTTCAATCCCTCATCACTATTATTCAAACTACACTTCTGATCATTTTACCACACAACAAGGTTTGTCTTCACATAATAATAATAACATTATTAATACCTCAATTTTGGACAATACTATGATGTGGGGTTGTCAAGAAAATTTAATGCCTGTTTTTGATAATTATGGAGCATTTGATCAAATTGTGTCACTTGATTGTGATACTATGTCTTCCTCTGGTGCTTGGATACATCCGAATTTCGTCGAGCAACAAGATTTTGCGGTTCCGGCTTTGTTGTCGGATTGTAAATTGGGATTTTATGGTGGAGGGATTCCGAATTTTAATGGAAGATATAATAATCAGCCACCTATTGGTCATGAGTTTGTAGAAGATCAATGTTGTGGTTTTGTTGAAGATATTAAACCACCTCCACCTTATCCTAATGTTGCAAGAGAAAATTGGGGGATACAAAGTAATCAAATAACAACGGTTGAAGAACCAAACATAAAGGTGGGAAGGTACTCAGAAGAAGAAAGGAAAGAAAGAATTCTTCGATATTTGAAGAAAAGAAATCAAAGAAATTTCAACAAAACTATCAAGTATGCATGTCGGAAAACTTTAGCTGATAGAAGAGTGAGAGTGAGAGGAAGGTTTGCAAGGAACAATGAGATATGTGAAGAAGATCACATGGCCACAAAAAAGCTTGAGAATCATCATGATGATCACATCAATGATGACTTTTATGGTTCTGATTCATTCCAGTTCCAGTTAAAGAATGAGGAGGAGGACTGGCTTCAAGAGGCTATGGCAAGTTTGGTGTATTTATCTCATTCATCACCGGATGATATGTGA 858 0.3625 MPLSPFFMASSIPHHYYSNYTSDHFTTQQGLSSHNNNNIINTSILDNTMMWGCQENLMPVFDNYGAFDQIVSLDCDTMSSSGAWIHPNFVEQQDFAVPALLSDCKLGFYGGGIPNFNGRYNNQPPIGHEFVEDQCCGFVEDIKPPPPYPNVARENWGIQSNQITTVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNEICEEDHMATKKLENHHDDHINDDFYGSDSFQFQLKNEEEDWLQEAMASLVYLSHSSPDDM 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03126 285 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 139 234 IPR045281 GO:0009909
Trre11g03126 285 Pfam CCT motif 181 223 IPR010402 GO:0005515
Trre11g03126 285 ProSiteProfiles CCT domain profile. 181 223 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03126 Trre-Chr11 42463721 42465845 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03126 159 233 C2C2-CO-like Transcription Factor Family AT5G15850 38.667 6.32e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre11g03126 CCT 9e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03126 - - cam:101492034 425.246