Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03117 ATGGTATATGAAGCAAATGCAAGAGTAAGGGACCCTGTTTATGGATGTGTAGGAGCCATATCCTCTCTACAGCAACAAGTTGATGGTCTTCAAACTCAATTAGCACAAGCACAAGCAGAGGTTGTCCATATGAAAATGCACCAATTGTCATCACCTAATCAGCACCAACCATCATATGTTCTTACTCCTGCTGCCTCCAATTCATCACCATCTTCAGAAAATGTGTACCAATCCAGCAGGCTGGTTTCTTCACACATGAACATTGACCAATCCTTATGGTCATACTAG 288 0.4201 MVYEANARVRDPVYGCVGAISSLQQQVDGLQTQLAQAQAEVVHMKMHQLSSPNQHQPSYVLTPAASNSSPSSENVYQSSRLVSSHMNIDQSLWSY 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03117 95 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 70 - -
Trre11g03117 95 Pfam Lateral organ boundaries (LOB) domain 1 38 IPR004883 -
Trre11g03117 95 ProSiteProfiles LOB domain profile. 1 41 IPR004883 -
Trre11g03117 95 Coils Coil 20 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03117 Trre-Chr11 42412433 42412720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03117 1 94 AS2 family AT1G16530 43.750 1.71e-20 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre11g03117 M_domain 5.5e-05 No_clan