Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03114 ATGGATCATAGTGAATATGTTGTTAATGATGATGATGATGATGTTCCACTTCCTGGATTTAGATTCCATCCAACTGATGAAGAACTTGTTACTTTTTATCTTCGAAGGAAACTTGATAAGAAACCTATTGCTATTGATCTCATCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAATCAAGTGTACCTGGAGCAGAAAAGGAATCTTACTTTTTTTGCAAAAGAGGGAGAAAATATAAGAACAGCATAAGGCCAAATAGAGTAACTGGCTCTGGATTTTGGAAAGCAACAGGAATAGACAAACCAATTTACTCAAATGGAGGAGAAGGAAATAATTGTGTTGGACTCAAAAAAACACTTGTTTACTATCGTGGTAGTGCTGGCAAAGGCACCAAGACTGATTGGATGATGCATGAATTTCGTTTACCATCTAAAATTATTGATGCCAACACAAATCTTCCATATGCTAAGATTATTGATGTTGATAATGCTCATGAAGCAGAAATTTGGACATTGTGTAGAATTTTCAAGAGAAATGTATCACAAAGGAAACCACAAATGGCAGATGTGAAACCATTTGCTACCAAGCGTCAAACCATTCAAGAAAAAAGAAGTAGAATAGACAGCAATATGGAGTTCAACATAAATCAACAAACATATATCAATTTTGGTGCAAGCCATGAGCAACATCACCACAATGAAGACAAACCAATTAATAACTATGCAATAAGTGATCAAAGTAATAATCAGTTTCATGTAGATCAGTTGAGCTCTTCAGTTTCACAACAACCTCAACAAAATAATGTAACACAATATTCAAATTTTTGGATTAACCAAGCTGCAAATGAGTTATTATCATTTGATAATTGGGATGAGCTTGGATCAGTTGTGAAGTTTGCTGTTGATTCACCTAGTTTGTAA 933 0.3408 MDHSEYVVNDDDDDVPLPGFRFHPTDEELVTFYLRRKLDKKPIAIDLIKQIDIYKYDPWDLPKSSVPGAEKESYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKPIYSNGGEGNNCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSKIIDANTNLPYAKIIDVDNAHEAEIWTLCRIFKRNVSQRKPQMADVKPFATKRQTIQEKRSRIDSNMEFNINQQTYINFGASHEQHHHNEDKPINNYAISDQSNNQFHVDQLSSSVSQQPQQNNVTQYSNFWINQAANELLSFDNWDELGSVVKFAVDSPSL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03114 310 ProSiteProfiles NAC domain profile. 16 182 IPR003441 GO:0003677|GO:0006355
Trre11g03114 310 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 266 - -
Trre11g03114 310 Pfam No apical meristem (NAM) protein 18 146 IPR003441 GO:0003677|GO:0006355
Trre11g03114 310 FunFam NAC domain-containing protein 35 25 185 - -
Trre11g03114 310 SUPERFAMILY NAC domain 17 182 IPR036093 GO:0003677|GO:0006355
Trre11g03114 310 Gene3D NAC domain 25 186 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03114 Trre-Chr11 42263085 42265433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03114 13 182 NAC Transcription Factor Family AT5G39820 59.551 2.79e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre11g03114 NAM 1.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03114 - - gmx:100790471 422.165