Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03113 ATGGGTATTAACGAAGATTTCAACATGGATCATAGTGAATATGTTGTTAATGATGATGATGATGATGTTCCACTTCCTGGATTTAGATTCCATCCAACTGATGAAGAACTTGTTACTTTTTATCTTCGAAGGAAACTTGATAAGAAACCTATTGCTATTGATCTCATCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAATCAAGTGTACCTGGAGCAGAAAAGGAATCTTACTTTTTTTGCAAAAGAGGGAGAAAATATAAGAACAGCATAAGGCCAAATAGAGTAACTGGCTCTGGATTTTGGAAAGCAACAGGAATAGACAAACCAATTTACTCAAATGGAGGAGAAGGAAATAATTGTGTTGGACTCAAAAAAACACTTGTTTACTATCGTGGTAGTGCTGGCAAAGGCACCAAGACTGATTGGATGATGCATGAATTTCGTTTACCATCTAAAATTATTGATGCCAACACAAATCTTCCATATGCTAAGATTATTGATGTTGATAATGCTCATGAAGCAGAAATTTGGACATTGTGTAGAATTTTCAAGAGAAATGTATCACAAAGGAAACCACAAATGGCAGATGTGAAACCATTTGCTACCAAGCGTCAAACCATTCAAGAAAAAAGAAGTAGAATAGACAGCAATATGGAGTTCAACATAAATCAACAAACATATATCAATTTTGGTGCAAGCCATGAGCAACATCACCACAATGAAGACAAACCAATTAATAACTATGCAATAAGTGATCAAAGTAATAATCAGTTTCATGTAGATCAGTTGAGCTCTTCAGTTTCACAACAACCTCAACAAAATAATGTAACACAATATTCAAATTTTTGGATTAACCAAGCTGCAAATGAGTTATTATCATTTGATAATTGGGATGAGCTTGGATCAGTTGTGAAGTTTGCTGTTGATTCACCTAGTTTGTAA 957 0.3406 MGINEDFNMDHSEYVVNDDDDDVPLPGFRFHPTDEELVTFYLRRKLDKKPIAIDLIKQIDIYKYDPWDLPKSSVPGAEKESYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKPIYSNGGEGNNCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSKIIDANTNLPYAKIIDVDNAHEAEIWTLCRIFKRNVSQRKPQMADVKPFATKRQTIQEKRSRIDSNMEFNINQQTYINFGASHEQHHHNEDKPINNYAISDQSNNQFHVDQLSSSVSQQPQQNNVTQYSNFWINQAANELLSFDNWDELGSVVKFAVDSPSL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03113 318 Gene3D NAC domain 33 194 IPR036093 GO:0003677|GO:0006355
Trre11g03113 318 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 274 - -
Trre11g03113 318 SUPERFAMILY NAC domain 25 190 IPR036093 GO:0003677|GO:0006355
Trre11g03113 318 FunFam NAC domain-containing protein 35 33 193 - -
Trre11g03113 318 ProSiteProfiles NAC domain profile. 24 190 IPR003441 GO:0003677|GO:0006355
Trre11g03113 318 Pfam No apical meristem (NAM) protein 26 154 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03113 Trre-Chr11 42263085 42265457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03113 21 190 NAC Transcription Factor Family AT5G39820 59.551 3.26e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre11g03113 NAM 1.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03113 - - gmx:100790471 432.95