Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03109 ATGGTTGAACAAGAAATAATAAGCAGAAAAGGTCCATGGACAGAACAAGAGGATTATAAATTAGCATATTTTGTTGGTTTATTTGGTGATCGTAGATGGGATTTTATAGCAAAGGTTTCAGGTTTGAGTAGATCAGGTAAAAGTTGCAGGTTACGTTGGGTTAATTATCTTCATCCTGATCTCAAACGTGGCAAGATGACACTTCAAGAAGAAAGACTTGTTATGGACCTTCACTCTAAATGGGGAAATAGATGGTCAAGAATTGCAAGAAAATTACCGGGAAGAACAGATAATGAGATTAAGAATTACTGGAGAACACACATGAGAAAGATGAGAGCACAAATGAAAAAACATTCAACACCTTCAACAATTTCATCACCTGATCAATCTTCCAGTTGTCAATCCTCAATTTTCTCAAACATTAATCACGCTGTGGATTCACATGCTTCCTACCAAGATGTTAGTGAAGAAAATTACCAAGTCCAAGAAATTGTTGAGGGATACTCAATGGATGATATTTGGAAAGATATTGCTATGTCAGAAGATGACATTAATATTCTTCAACCTGTTTATGATGGACATAGTGAAGAAAATTGCAACTTTTTTGGTCCTATAATGCCTTCTACATCATCATGGGATTATTCTAATTTAGATCCATTATGGGTGATGGATGAAGTAGAAAGTAAGATGTTATTCCCTCCTATTGGTGACCAATATTTTTCCTTCTATGATCAACAAGGGAATACATTTCTAACTGGTTAA 762 0.3491 MVEQEIISRKGPWTEQEDYKLAYFVGLFGDRRWDFIAKVSGLSRSGKSCRLRWVNYLHPDLKRGKMTLQEERLVMDLHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKMRAQMKKHSTPSTISSPDQSSSCQSSIFSNINHAVDSHASYQDVSEENYQVQEIVEGYSMDDIWKDIAMSEDDINILQPVYDGHSEENCNFFGPIMPSTSSWDYSNLDPLWVMDEVESKMLFPPIGDQYFSFYDQQGNTFLTG 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03109 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Trre11g03109 253 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 8 135 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre11g03109 253 CDD SANT 65 108 IPR001005 -
Trre11g03109 253 SUPERFAMILY Homeodomain-like 9 104 IPR009057 -
Trre11g03109 253 FunFam Myb transcription factor 10 62 - -
Trre11g03109 253 CDD SANT 12 57 IPR001005 -
Trre11g03109 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 57 IPR017930 -
Trre11g03109 253 SMART sant 9 59 IPR001005 -
Trre11g03109 253 SMART sant 62 110 IPR001005 -
Trre11g03109 253 FunFam MYB-related transcription factor 66 112 - -
Trre11g03109 253 Gene3D - 67 109 - -
Trre11g03109 253 Gene3D - 10 62 - -
Trre11g03109 253 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Trre11g03109 253 Pfam Myb-like DNA-binding domain 63 107 IPR001005 -
Trre11g03109 253 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Trre11g03109 253 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03109 Trre-Chr11 42165669 42167204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03109 1 230 MYB Transcription Factor Family AT5G59780 56.223 5.50e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre11g03109 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03109 K09422 - gmx:100776886 335.109