Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03101 ATGAAGTGGTTGCTCCGAAGATGGCGTGTTACTGCAGAATTGTGCAGCAAATTCTGCTATGGAATTAAAACAATCTCAGTGTTCCGGCAAGTTTCAGAGTCGTCATTGTTTCCATTCAAGCGTCGTTTACAGGTAAACAGTCGCGACTACACCATTTTAAGCTGTAAATCTAATAATACAGGGTCACAATTCATTCCCATTGATTGTCTTAGTAATTCAACATATTTTGTATCAGCTATTCTTTCTGTGAACTTGATCAATTCACTTCCTGGGTCTTGTTCTGTTATCAAAAGGCTTTTAGTTCCAGTTGCAAGACAAGAACGATTCGGAGAAAATCTCAGAGATGATCTTAATGCTGATCTTCAATTAACATGGGATAAACCTGACTGCAGTTTTTGTGAAACACATGGACTAATGTGTGGATTAGAAAGCATTTACAACAATCAAGTTGTCTGTTTGACTGATTACCAAGAAGGTCCAACACGACAAGGACTTAAAATTTTTAGAATTATAGCATTATTTATTACTGGACCAGCTCTAATCTTTGTTATGTTAATGGCAACTTGTGTGTGCTACAATGATAGAATAGCCAACATTACCAGAAATGCTGCTTCTCGGTCAGCACCAGCTGCAATATCACCACAACCTGAAGTCACAATAGTGACAGGTCTAGACGAATCGACAATTGAATCTTATGAGAAAGTAGTTCTTGGGGAGAGTCGACGCGTACCTGGACCAAACGATGGATGTTGTTGGATATGCTTATCAGAATACAATAGTAAAGAGACAATAAGATGCATTCCTGGATGCAAACATTGTTTTCATGCTGATTGCATTGATGAGTGGCTTCATATGAATATTACATGCCCTGTTTGCCGTAATTCTCCTCCTCCTTCTCCTCTTAATGTTGCTTCTAGTAATGTTTGA 927 0.384 MKWLLRRWRVTAELCSKFCYGIKTISVFRQVSESSLFPFKRRLQVNSRDYTILSCKSNNTGSQFIPIDCLSNSTYFVSAILSVNLINSLPGSCSVIKRLLVPVARQERFGENLRDDLNADLQLTWDKPDCSFCETHGLMCGLESIYNNQVVCLTDYQEGPTRQGLKIFRIIALFITGPALIFVMLMATCVCYNDRIANITRNAASRSAPAAISPQPEVTIVTGLDESTIESYEKVVLGESRRVPGPNDGCCWICLSEYNSKETIRCIPGCKHCFHADCIDEWLHMNITCPVCRNSPPPSPLNVASSNV 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03101 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 298 IPR013083 -
Trre11g03101 308 SUPERFAMILY RING/U-box 244 297 - -
Trre11g03101 308 ProSiteProfiles Zinc finger RING-type profile. 251 293 IPR001841 -
Trre11g03101 308 Pfam Ring finger domain 251 293 IPR001841 -
Trre11g03101 308 CDD RING-H2_EL5-like 250 293 - -
Trre11g03101 308 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 35 296 IPR046948 -
Trre11g03101 308 Pfam Wall-associated receptor kinase C-terminal 88 154 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03101 Trre-Chr11 41996425 42006070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03101 45 298 C3H Transcription Factor Family AT2G25410 39.535 4.00e-57 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03101 - - gmx:100798415 353.984