Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03099 ATGATTCCAATTCCACAATGCTCAGTTCCTTATATAGCAAAGGATTGGTTGAACAAGTCATGTTGTTGGAGCTTTATGGTATTTGTTTTCGATGGAATCAAAGTTGCGATGTTGGCCCAGACGATTGAGAATACTGCATTCTTTGATGATTCCTATTTGAGCTGTGGACGAGTCAATTCGACACCATTTTTGATTCTCAACAATTCTACTACTTGTCCTTACAAAGATCCCAATGGTATCATTGATCCATCAATTTTCAATTTTGGAATATTTATTGATGCGCTAACGTCGCGTGTGGTAGAATTGAATACAAGCTTTCATCGTAAATTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCCGTTGGGCAGAATCTGAAGACAAGCACTTATACTGGGGAGATAATCTTTGCTATCTTCATCGCCGTTTTTGGATTGGTTCTATTTGCATTACTTATTGGAAACATGCTGGTAATCCTTAATTTACTTAAAAAAGTGCCGATTATTGGGAGCATGGATGAAAAGTTGTTGGATGCAATGTGTGATAAACTGAAACCAGTCCTATATACCGAGAAAAGTTGCGTTGTTCGTGAAGAAAACAACTCCAACACACTTTCAGGTTCTATTCCTTGCAATGGAGGACATGGGGAGCGCGATTTCAATACTCATAAAAACTAG 684 0.383 MIPIPQCSVPYIAKDWLNKSCCWSFMVFVFDGIKVAMLAQTIENTAFFDDSYLSCGRVNSTPFLILNNSTTCPYKDPNGIIDPSIFNFGIFIDALTSRVVELNTSFHRKFFYCFWWGLRNLSSVGQNLKTSTYTGEIIFAIFIAVFGLVLFALLIGNMLVILNLLKKVPIIGSMDEKLLDAMCDKLKPVLYTEKSCVVREENNSNTLSGSIPCNGGHGERDFNTHKN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03099 227 Gene3D - 20 164 - -
Trre11g03099 227 SUPERFAMILY cAMP-binding domain-like 161 206 IPR018490 -
Trre11g03099 227 Pfam Ion transport protein 103 164 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre11g03099 227 SUPERFAMILY Voltage-gated potassium channels 103 162 - -
Trre11g03099 227 Gene3D Jelly Rolls 168 207 IPR014710 -
Trre11g03099 227 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 161 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03099 Trre-Chr11 41977093 41984946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03099 162 200 Ion Channels AT2G46430 66.667 7.04e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03099 K05391 - gmx:100795201 158.303