Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03090 ATGTGGATTGTGTACAAAGGAGACACCGAAGACCACCTTGAGTTGTTGGTGCGCGATATCAAGGGGGATACTATCCAGGTCACCATCGCCAACAATGATATACAGACTTGGAAACCAAAACTGTCTGTAGGAAAAACATATCAAATGAACAATTTCAGAGTTTTTGACAATGATTCCGATTACAAGATGACAACACACAAGTTTAGGCTAACATTGGTTGGTGCTACAAAAATTGAAGAAGCTGAAATTCCTGATATCCCACTCACCCATTTTAACTTCAAGGATTTTGCTGAAATTCATGCTGGGAAGTACACTCCAGACTTATTAGTTGATGTTATTGGTGTCATACATGAATTCCGCAAATGTGTTACTGCATCTGCTACAAGGAAAGCCCAAGTTTCATTCACTCTCAAGGACTTAAGGGATACTATTATGGATTGCACTCTTTGGGACTCCCTGTCGGTTGAGTTTATGACATATTATAACCAACGATCTGATACTGGTCCCATGGTCATCATCATTAAGCATGCCAGGGTGAAGGAGCCTCAAGGTGTGTACCCAATCCAGTTGACTAATGTATGGAATGGCACGAAGTTGGTATTTGATACGTCTGTTCCTGAGATTAAAGCATTTCTGAACAGCTTGCCAGATAATGTTACCTACGTAACACAGAATACCATTTCCTCAAATTCAACCCAGTTTTACACACAAACATCAGCTGGGTCGCAAAACACCTCTGACGAAAACTGGATTAAGGGTGCACGTATTTTGTCTTTGGGCGACATGAAGAAACTCAAAGTGGACACTTATTGTGTTACAGTCGTTATGACAAAGAAAGTTAAAGTGTCCAACTATGGATGGTTTTTCAGAGCTTGCCGTGAATGCAATTTGAAGGCAGAGGGAAAGGTACCTCCGTATATTTGTAAGAAGGGACACCAAGAAACTGAACCATTGATCAAGTATAAAGTTGATGTTGAGGTTTTTGATGGTGATGAGGTAGCAAAATTTGTCTTCTGGGATAATACTCTTGAAGATTTGCTTGGCATGACTGCATCTACGCTACTTGCAAAACAGTGTCAGATTGGTTGTCCCGACGCAGTAGATTACCCTGATGACCTAGATGACATTATGGGAAGGAAATTTGCCTTCAGAGTCAAATGGCAACCAGGATGGGGAGGACAGGGATCTGTGGTCCACTGCAAGGATAGCCCAGAATTAGTATCCAAGATCCAAGAACACCTCCCTGTCGCAGAGAGTGCTGCCAAAGATATAGAAACCATTGATGAACTACCTGAAGAAGATATCTCCCTTAGTGATTCACCACAAATCCAGAATTTTACTAAAGCTGATATCGACAAGTTTGCCAAGTTGGATGATTCAATTCTATGCACGCCAAATGTTGCCCCTCATGGAGACACTGACATGTCCGACTCTTCTCAAAAAACTCCAGCCAAGAGAGGTGCTTCGAAGAATTTACCCATTGACCAAACCAACCTAGATGCTCAGTTCTCATCCACCAGGGGAGGGAAACTCATTAAGAAGGAGAAGCCATAA 1554 0.4196 MWIVYKGDTEDHLELLVRDIKGDTIQVTIANNDIQTWKPKLSVGKTYQMNNFRVFDNDSDYKMTTHKFRLTLVGATKIEEAEIPDIPLTHFNFKDFAEIHAGKYTPDLLVDVIGVIHEFRKCVTASATRKAQVSFTLKDLRDTIMDCTLWDSLSVEFMTYYNQRSDTGPMVIIIKHARVKEPQGVYPIQLTNVWNGTKLVFDTSVPEIKAFLNSLPDNVTYVTQNTISSNSTQFYTQTSAGSQNTSDENWIKGARILSLGDMKKLKVDTYCVTVVMTKKVKVSNYGWFFRACRECNLKAEGKVPPYICKKGHQETEPLIKYKVDVEVFDGDEVAKFVFWDNTLEDLLGMTASTLLAKQCQIGCPDAVDYPDDLDDIMGRKFAFRVKWQPGWGGQGSVVHCKDSPELVSKIQEHLPVAESAAKDIETIDELPEEDISLSDSPQIQNFTKADIDKFAKLDDSILCTPNVAPHGDTDMSDSSQKTPAKRGASKNLPIDQTNLDAQFSSTRGGKLIKKEKP 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03090 517 Gene3D - 3 82 IPR012340 -
Trre11g03090 517 SUPERFAMILY Nucleic acid-binding proteins 268 389 IPR012340 -
Trre11g03090 517 Gene3D - 232 412 IPR012340 -
Trre11g03090 517 CDD RPA1_DBD_A_like 1 78 - -
Trre11g03090 517 Pfam Domain of unknown function DUF223 14 105 IPR003871 -
Trre11g03090 517 CDD RPA1_DBD_B_like 111 216 - -
Trre11g03090 517 MobiDBLite consensus disorder prediction 471 505 - -
Trre11g03090 517 SUPERFAMILY Nucleic acid-binding proteins 6 82 IPR012340 -
Trre11g03090 517 Gene3D - 84 225 IPR012340 -
Trre11g03090 517 SUPERFAMILY Nucleic acid-binding proteins 90 223 IPR012340 -
Trre11g03090 517 MobiDBLite consensus disorder prediction 466 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03090 Trre-Chr11 41855201 41857884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03090 19 354 Core DNA Replication Machinery Family AT5G08020 24.928 2.85e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03090 - - tpra:123884216 659.833