Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03054 ATGGCGACGCGTAGGGGGTTGATGGAACAAGACCTGAGTAAGTTAGATGTGACAAAATTGCATCCGCTTTCTCCTGAAGTTATATCCCGTCAGGCTACTATTAATATTGGCACCATAGGTCATGTGGCACATGGAAAGTCAACAGTTGTGAAAGCAATATCAGGTGTTCAGACTGTGCGTTTTAAAAATGAGTTGGAACGTAACATTACAATCAAGCTTGGTTATGCCAATGCAAAAATATACAAGTGTGAAGATGAACGGTGTCCAAGGCCTATTTCCTACAAGGCTTATGGAAGTGGCAAGGAAGATAATCCTAGTTGTGATGTACCAGGGTTTGAAAATTCCAAGATGAAATTGCTGAGACATGTTTCTTTTGTTGATTGTCCAGGACATGATATTCTCATGGCTACTATGCTTAATGGAGCAGCAATTATGGATGGAGCTTTGCTACTCATTGCTGCTAATGAAAGCTGCCCGCAACCTCAAACCTCTGAGCATTTAGCTGCTGTGGAAATTATGCGTCTACAGCACATAATAATCCTCCAGAACAAGGTTGACTTGATTCAAGAAAATGTCGCAATCAACCAGCATGAAGCAATTCAGAAGTTTATACAAGGAACTGTTGCTGATAGTGCACCAGTAGTACCAATTTCAGCACAATTGAAGTATAATATTGATGTTGTGTGTGAGTACATCGTGAAAAAGATCCCAATCCCTGAACGGAACTTCATTTCTCCACCTAATATGATAGTAATTCGGTCATTTGATGTCAACAAACCTGGTTATGAGGTTGATGAAATTAAAGGAGGCGTAGCTGGTGGAAGTATTCTGAGGGGTGTTTTAAAGGTCAACCAATTCATTGAAGTTCGACCTGGAATAGTTATTAAAGACGAGAGTGGAAATATCCGATGCACACCCATCTACTCCAGAATAGTTTCATTATTTGCTGAACAAAACGAGCTTCAATTTGCAGTTCCTGGAGGTCTAATTGGTGTTGGAACAACAATGGATCCCACTCTGACACGTGCTGACAGGTTGGTAGGGCAAGTTCTCGGAGAGGTTGGATCACTGCCTGATGTTTTTGTAGAGCTTGAGGTAAACTTTTTCTTGCTTCGACGGCTTCTTGGTGTCCGGACAAAAGGTTCCGAGAGACAAGGAAAGGTCTCAAAGCTGGTGAAAGCAGAAATGCTAATGTTGAACATAGGATCAATGTCAACAGGTGCCAGAGTGGTTGCTGTGAAGAATGACTTGGCAAAGTTACAACTTACTTCCCCTGTGTGCACCAGCAAGGGTGAGAAGATTGCTCTAAGTAGACGTGTTGAGAAGCATTGGCGTCTTATCGGTTGGGGACAAATCCAAGCTGGAATCACCCTTGAAGTCCCCCCTGCCCCCGTTTTCAGTTGA 1404 0.4266 MATRRGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPISYKAYGSGKEDNPSCDVPGFENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADSAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFISPPNMIVIRSFDVNKPGYEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVIKDESGNIRCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLVKAEMLMLNIGSMSTGARVVAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLEVPPAPVFS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03054 467 CDD eIF2_gamma_II 242 355 IPR044127 GO:0000049
Trre11g03054 467 Pfam Elongation factor Tu domain 2 269 351 IPR004161 GO:0005525
Trre11g03054 467 Gene3D - 31 241 IPR027417 -
Trre11g03054 467 Pfam Initiation factor eIF2 gamma, C terminal 363 452 IPR015256 -
Trre11g03054 467 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 6 460 - -
Trre11g03054 467 CDD eIF2_gamma_III 358 452 IPR015256 -
Trre11g03054 467 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 31 240 IPR000795 GO:0003924|GO:0005525
Trre11g03054 467 FunFam Eukaryotic translation initiation factor 2 subunit gamma 358 457 - -
Trre11g03054 467 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 356 453 IPR009001 -
Trre11g03054 467 CDD eIF2_gamma 34 241 IPR044128 GO:0005525
Trre11g03054 467 FunFam Eukaryotic translation initiation factor 2 subunit gamma 31 241 - -
Trre11g03054 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 243 IPR027417 -
Trre11g03054 467 Pfam Elongation factor Tu GTP binding domain 33 237 IPR000795 GO:0003924|GO:0005525
Trre11g03054 467 Gene3D Translation factors 358 456 - -
Trre11g03054 467 Gene3D Translation factors 244 357 - -
Trre11g03054 467 PRINTS GTP-binding elongation factor signature 140 151 IPR000795 GO:0003924|GO:0005525
Trre11g03054 467 PRINTS GTP-binding elongation factor signature 35 48 IPR000795 GO:0003924|GO:0005525
Trre11g03054 467 PRINTS GTP-binding elongation factor signature 178 187 IPR000795 GO:0003924|GO:0005525
Trre11g03054 467 PRINTS GTP-binding elongation factor signature 124 134 IPR000795 GO:0003924|GO:0005525
Trre11g03054 467 FunFam Eukaryotic translation initiation factor 2 subunit gamma 242 357 - -
Trre11g03054 467 SUPERFAMILY Translation proteins 241 355 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03054 Trre-Chr11 41202225 41206700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03054 1 464 Eukaryotic Initiation Factors Gene Family AT1G04170 90.517 0.0 881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03054 K03242 - gmx:100784099 889.026