Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03046 ATGGCGAAACCTGGCCGAGCTCGTCGCTCACCACCGTCGGGTTCCGCCTCCGGATCTTCTTCTCTCTCCTCCTCTTCTCGTTCCTCTTCTCGCTCCCGCTCCCGCTCCCGTTCCAGATCTTTCTCTTCCTCCTCATCTCCCTCCCGCAGTTCCAAGAGCCGTAGCCGTAGTCCTCCTCCTCAGAGACGCAAAAGTCCTGGTGAACCAGCTAGGCGAGGTCGATCTCCTCCTCTTCCTCCCCCTCCCCAGTCTAAGAGAACTTCTTCTCCCCCAAGGAAGCCTTCTCCTGTACGAGAGTCTCTTGTTCTGCACGTAGAAAAACTCAGCAGGAATGTCAATGAAGGCCATTTGAAAGAAATCTTTAGTAATTTTGGCGAAGTTGTAAGTGTGGAGTTGGTGATGGATCGAGTTGTCAATCTTCCCAAAGGATATGGGTATGTGCATTTCAAGACAAGAGGGGATGCTGAAAAAGCATTATTGTACATGGATGGCGCCCAAATAGATGGCAACGTCATTAAGGCAAGATTTACTCTGCCTCCAAGACAGAAAGTTTCACCACCCCCAAAGGCTTCTGCTGTTGTTCCAAAGAGAGAGGCACCTAGGACTGATAATGCTGGTGCAGATGTTGAAAAAGATGGGCCAAAGCGTCTAAGAGAATCTTCTCCCCGGAGGAAACCTCTCTCACCACGGAGAAGATCTCCTGTGCCTCGAAGAGCTGGATCTCCAAGACGACCTGAATCTCCTCGCCGCCGTGCAGATTCTCCTGTCCGTCGTCGATTAGACTCTCCTTATCGCCGTGGAGCTGGAGACACACCTCCCAGGAGGAGACCCGTGTCTCCTGGAAAAGGTCGTTCTCCATCTCCACCACCAAGGCGCTTTAGATCCCCTGCAAGGCTTTCGCCTAGAAGGATGCGTGGAAGCCCAGGTCGGAGACGTTCTCCTCCTCCACCTCTAAGACGCCGTTCACCTCCTAGACGAGCTCGGAGTCCTCCTAGAAGATCTCCAGTTGGTCGTAGGCGTAGTCGCTCTCCAATACGTAGGTCTGCACGCTCACGCTCTAGATCATTCTCACCGCGCAGAGGTCGACCACCTGTGAGACGCGGAAGGTCATCATCCTACTCTGATTCACCAAGTCCTCGCAAGGTGTCTCGGAGATCAAAGAGTCGCAGTCCAAGAAGGCCTTTGAAAGGAAGAGCCAGTAGCAACAGTAGCAGCAGTGGTTCACCACCCCCAGCTCGCAAACCATAG 1248 0.5337 MAKPGRARRSPPSGSASGSSSLSSSSRSSSRSRSRSRSRSFSSSSSPSRSSKSRSRSPPPQRRKSPGEPARRGRSPPLPPPPQSKRTSSPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRVVNLPKGYGYVHFKTRGDAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKASAVVPKREAPRTDNAGADVEKDGPKRLRESSPRRKPLSPRRRSPVPRRAGSPRRPESPRRRADSPVRRRLDSPYRRGAGDTPPRRRPVSPGKGRSPSPPPRRFRSPARLSPRRMRGSPGRRRSPPPPLRRRSPPRRARSPPRRSPVGRRRSRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLKGRASSNSSSSGSPPPARKP 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03046 415 MobiDBLite consensus disorder prediction 12 55 - -
Trre11g03046 415 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 7 262 - -
Trre11g03046 415 MobiDBLite consensus disorder prediction 1 98 - -
Trre11g03046 415 Gene3D - 15 185 IPR012677 -
Trre11g03046 415 SMART rrm1_1 102 175 IPR000504 GO:0003723
Trre11g03046 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Trre11g03046 415 MobiDBLite consensus disorder prediction 296 366 - -
Trre11g03046 415 MobiDBLite consensus disorder prediction 72 89 - -
Trre11g03046 415 MobiDBLite consensus disorder prediction 242 272 - -
Trre11g03046 415 MobiDBLite consensus disorder prediction 395 415 - -
Trre11g03046 415 MobiDBLite consensus disorder prediction 201 226 - -
Trre11g03046 415 FunFam Serine/arginine-rich splicing factor SR45 3 186 - -
Trre11g03046 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 173 IPR000504 GO:0003723
Trre11g03046 415 SUPERFAMILY RNA-binding domain, RBD 89 186 IPR035979 GO:0003676
Trre11g03046 415 CDD RRM_RNPS1 103 175 IPR034201 -
Trre11g03046 415 MobiDBLite consensus disorder prediction 178 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03046 Trre-Chr11 41086195 41092504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03046 103 176 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 1.52e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03046 K14325 - gmx:100783566 265.774