Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03006 ATGGCTTCCGAAAACACCACTGCAGATACCGTTGCCAAAGCCGTAGAGTCTCTTCTCAAATGGCGAAAATCAAAGCTTCAAACCGAAAAACCAAAACTCTTCGACGAAGACGAAGAATTCGTTTACCTTATTCTAACCCTAAAAAAAATTCCACACAATAGTCGCGTTAACCCTCACAAAATCCCAATCCCTCATTCCCTTCTCTCATCCTCATCGGAACAGTGTCTCATCGTCGATGACAGAGCTAACAAGCAAGCTCGTCTCACCAAAGACGAAGCTCAGAAGAAGATTCAATCTGAATCAATTCCTATTTCGAAAGTTCTTAAGCTTTCGAAACTGGCTTCCGATTATCGTCCGTTTGAGGCGAAACGGAAGCTTTGTAATTCATATGATTTGTTTTTTGCTGATAAAACTATTGTTCCATTGTTGCCGAGGTTGTTAGGGAAACAGTTTTTCAAGAAGAGGAAGCTTCCGGTGAGTGTTGATTTGAAGAAGATGAATTGGAAGGAGCAGATTGAAAAGGCTTGTTGTTCTGCTTTGTTGTTTTTGAGGACTGGGACTTGTAGTGTTATTAAGGTGGCTAAGTTGAGTATGGAGAGAGATGAGATTGTTGAGAATGTTGTTGCTGCTATGGAGGGTGTTGTCGAGGTTTTTCCGAAGAAGTGGGCAGTTGTTAGGTCTTTTCATGTTAAGTTGTTGGAGAGTCTTGCTTTGCCTGTTTATCAGGCTGTTCCTGATGCTAGGTTGAAAATTGAGGGTGTTAAGGATTTGGAGGCTGCGTTGGCGAAGGAAGAGAAGAAGGATCGCGATGGGAAAGATGGAAAGAAGAGTAATAAGAAGAAGGGGAGGATTCATGAGATTAAGTATATGGATGATAAAATGAGTGAGGATGGTACGGATCATGAGGATGTTGATGATATTGATGATGATGTTCTTGATGGTGTTGATTTGGTTGATGATGATATTGAGAGTGAAGAATTGGTTGGTAATAAGGGGAAAAAAGGAATGAAAAAGCGGGATTCTAGTGAGTTGGGAAGTGTGAAATCATTGAAGGGTTCTGCTAAAAGGAAGAAGAAAGACGGGTCTGCTGTGAATGAAGCAGAAGAAGGTTCAATCAAGAAGGGCAGCGACAAGAGAAAGAAATTATCGGTGAAGGATGAGGGTTCGGATAAGAAGAAAAAGAGGTTGGGTGTGAAAGGTGCAGGAGACTTTATCAAGAAGAGTGGAAAGGTTGAGGTTGAGGATGCCAAAACTGCAAAAGAAGCTTTGATCAAGAAGGCCGAAAAAAAATTATCGGTCAAGGATGTGGTTTCGGACAAAAAGACAAAGAGAGCGGATGCGAAGGTTGGAGTTGGGTTTGGATTCTGGATTTTTGCGATGATTTGA 1386 0.4156 MASENTTADTVAKAVESLLKWRKSKLQTEKPKLFDEDEEFVYLILTLKKIPHNSRVNPHKIPIPHSLLSSSSEQCLIVDDRANKQARLTKDEAQKKIQSESIPISKVLKLSKLASDYRPFEAKRKLCNSYDLFFADKTIVPLLPRLLGKQFFKKRKLPVSVDLKKMNWKEQIEKACCSALLFLRTGTCSVIKVAKLSMERDEIVENVVAAMEGVVEVFPKKWAVVRSFHVKLLESLALPVYQAVPDARLKIEGVKDLEAALAKEEKKDRDGKDGKKSNKKKGRIHEIKYMDDKMSEDGTDHEDVDDIDDDVLDGVDLVDDDIESEELVGNKGKKGMKKRDSSELGSVKSLKGSAKRKKKDGSAVNEAEEGSIKKGSDKRKKLSVKDEGSDKKKKRLGVKGAGDFIKKSGKVEVEDAKTAKEALIKKAEKKLSVKDVVSDKKTKRADAKVGVGFGFWIFAMI 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03006 461 CDD Ribosomal_L1 11 240 IPR028364 -
Trre11g03006 461 MobiDBLite consensus disorder prediction 263 308 - -
Trre11g03006 461 Pfam Ribosomal protein L1p/L10e family 19 235 IPR028364 -
Trre11g03006 461 MobiDBLite consensus disorder prediction 356 394 - -
Trre11g03006 461 SUPERFAMILY Ribosomal protein L1 11 241 IPR023674 -
Trre11g03006 461 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 13 235 - -
Trre11g03006 461 MobiDBLite consensus disorder prediction 326 345 - -
Trre11g03006 461 MobiDBLite consensus disorder prediction 326 394 - -
Trre11g03006 461 Gene3D - 84 177 IPR016095 -
Trre11g03006 461 FunFam Ribosomal protein L1p/L10e family 86 177 - -
Trre11g03006 461 Coils Coil 410 430 - -
Trre11g03006 461 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03006 Trre-Chr11 40514033 40516894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03006 129 231 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 27.184 2.36e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03006 K14775 - gmx:100782862 427.172