Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02996 ATGTATCACTGTTTTATTAGTACACGTTCCAGTAAACCAAATTCATGCATACTTGTATGTTCTAATGCCGGTCAACGTACAACAGATAATACCAAGAATGAGGAAAGTAATACACTTAAAAGAAAATGTAGGAAAAGGTGCTCTACTTCAAGAACTAATTGTATGGCATCACTTACTGCTTCAAAGGCACGAAAGAGACGTAGGTGGGCTATCATTGGCTTTAACAATGTCCACAATCATGGTATGGTTAGTCCAAAGAGTGTTAACAATCTTAGATGTCATAAGAAAATGAGTGGTGCAGCACAAAGCCTTGTTGAAACATTTGATAAAGAGGGTCTACCTACCGGAAAAGTTGCTGCATTGTTTAACAATGGAGGTTCAACCTTCTCTAATAGAGATTGTTGGAATCATCTTAGAGATCTTCGATCTAGAAACTTAGATGTTGGAGATGCTCAAGCTGTGCTCAATTTTTGCATCCAAAAGCAGACTGAGAATCCAAATTTCTTTTATGCAATACAGTGCGATAATGATTCACGAATGATTAACTTTTTTTGGGTAGACGCAAGGTCAAGGTTAGCCTATAAAGTATTTGGAGATGTTGTTACATTTGATACAACATATAAGACCAATAAGTATAGTATGTCGTTTGCACCTTTTACTGGGTTGAATCATCATCACCAGTCTATTTTATTTGGTTGTGCTTTGTTGCAAGATGAAACAGAGAAATCATTTACATGGTTGTTTGAGAATTGGCTTAAAGCAATGGGTGGAAAGTGTCCTGTGTCAATAATTACTGATCAAGATTTGGCAATGAGAGCTGCAATATCCAAGGTATTTCCACAAACTCGACATCGTTTATGTTTGTGGCATATTAGGAAAAAATTTCCTGAAAAGCTTTCACACGTTTACCATAAAAATTCAACTTTTAAGCGTGATCTAAAAAGGTGCATACGTGATTCCTCATGTATAAAAGACTTTGAAGAAGATTGGCAACATATAATGGTTGAGTATGATTTGCTGAAAAACAAATGCCTTCAGGGTTTGTACAAGATCAGAGAATCATGGATTCCAGTTTATAATAGAAATACTTTTTTTGCTGGGATGAATACTACACAGAGGAGTGAAAGCATCAATGCTTTTTTTGATTCTTTTGTAGATTCGTCAACCACGCTGCAAGATTTTGTAGTGAAGTTTGACAAAGCTGTTGATAGTCGCTACGAGAATGAAAAGAAAGAAGATTTTGAGTCGAGACATCGAGAGCGTATATTAAGTATTGGATCAAAAATTGAAGAGCATGCTGCATCTTTTTATACTAGAACCATCTTTAATAAATTTCAAGATGAACTAGCAAAGGTTTGTCGGTTCACAAGAGAGAAAGTTGTGAAAAGTGGGTCTCAATATACATATAAGGTAACCGATGGTTATGATTCTCGAGACTCATTCATTGTAAGTGTGGATCTAGATACAAGGGACACCAAATGTGGTTGTCAACTTTTTGAATTTATGGGGATATTGTGTAGGCACATCTTGGTGATTTTTCAAGCAAAAAATATTGTTGAAATTCCAAGTAAGTATATTTTACACCGTTGGACAAAGGATGCTAATAAGAGTTTAGGATTTAGTGTTCGTGAAACAAATTCGGTATGTGATAATGGTAATTCAGCAACCTTGCGAAGTATGCACGTGCATAATCAAGTAAACAGGTTTCCCGATCTTGCTTCAAAATCAGAGAGAGTTTACAATTTTATCTCATCAGGGTTGGAACAATTATATAAAGAGGCAATGAAAATGGATTCTGAAATGCAAACTAGTAAGGATGATCTTCTTTCTGAGACAAGTTGTCCAGATATGTTATTCCCTGAGCAAGCAAATGAAGAGGCTGAATTAACTATTAGAGATCCAGTAAAATCACAAACCAAAGGAAGACGAAAGGATGATGTCAGACTCCCTAAATCTGGAAGAATCAAAAGTAGTCTAGAGCTGTCAATGAATCGACTCACAAGAAAAAGACACAATTGTCAATTATGTAATGAACCTGGTCATAATCGAAGAAGTTGCAAGCTAAAAACAAGTGAGGAAGAAGCTAACTCATCTACTTAA 2100 0.3571 MYHCFISTRSSKPNSCILVCSNAGQRTTDNTKNEESNTLKRKCRKRCSTSRTNCMASLTASKARKRRRWAIIGFNNVHNHGMVSPKSVNNLRCHKKMSGAAQSLVETFDKEGLPTGKVAALFNNGGSTFSNRDCWNHLRDLRSRNLDVGDAQAVLNFCIQKQTENPNFFYAIQCDNDSRMINFFWVDARSRLAYKVFGDVVTFDTTYKTNKYSMSFAPFTGLNHHHQSILFGCALLQDETEKSFTWLFENWLKAMGGKCPVSIITDQDLAMRAAISKVFPQTRHRLCLWHIRKKFPEKLSHVYHKNSTFKRDLKRCIRDSSCIKDFEEDWQHIMVEYDLLKNKCLQGLYKIRESWIPVYNRNTFFAGMNTTQRSESINAFFDSFVDSSTTLQDFVVKFDKAVDSRYENEKKEDFESRHRERILSIGSKIEEHAASFYTRTIFNKFQDELAKVCRFTREKVVKSGSQYTYKVTDGYDSRDSFIVSVDLDTRDTKCGCQLFEFMGILCRHILVIFQAKNIVEIPSKYILHRWTKDANKSLGFSVRETNSVCDNGNSATLRSMHVHNQVNRFPDLASKSERVYNFISSGLEQLYKEAMKMDSEMQTSKDDLLSETSCPDMLFPEQANEEAELTIRDPVKSQTKGRRKDDVRLPKSGRIKSSLELSMNRLTRKRHNCQLCNEPGHNRRSCKLKTSEEEANSST 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02996 699 Pfam MULE transposase domain 200 294 IPR018289 -
Trre11g02996 699 MobiDBLite consensus disorder prediction 622 654 - -
Trre11g02996 699 MobiDBLite consensus disorder prediction 674 691 - -
Trre11g02996 699 ProSiteProfiles Zinc finger SWIM-type profile. 481 517 IPR007527 GO:0008270
Trre11g02996 699 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 593 IPR031052 GO:0006355
Trre11g02996 699 MobiDBLite consensus disorder prediction 674 699 - -
Trre11g02996 699 Pfam FAR1 DNA-binding domain 13 83 IPR004330 -
Trre11g02996 699 Coils Coil 587 607 - -
Trre11g02996 699 SMART 26again6 492 519 IPR006564 GO:0008270
Trre11g02996 699 MobiDBLite consensus disorder prediction 626 653 - -
Trre11g02996 699 Pfam SWIM zinc finger 483 517 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02996 Trre-Chr11 40170109 40172208 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre11g02996 MULE 3e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02996 - - qlo:115970754 827.78