Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02989 ATGACCTGTTTCCCTTTCTCATTCAGCAAGAAATCTTCTTCTTCATTGCCTTCTGCAAGACAAAATCTAGACAATGACGAAGATGATATTTCAAGCATTCAAAATGTTAAGATCTATAGCTACAAAGAACTAAGGAATGCAACTGATAACTTTAGTGTGGCCAATAAAATTGGAGAGGGTGGTTTTGGTTCCGTCTACATGGGTCGACTTAAAGGTGGAATACTTGCTGCTATAAAAGTTCTTTCAGCTGAATCAAAACAAGGTGTGAAGGAGTTCTTGACGGAGATTAACATGATCTCCGAAATAGAGCATGAAAATTTGGTCAAGCTATATGGTTGTTGCGTGGAAAAAAATAACAGGATTTTAGTCTACAATTACCTTGAAAATAATAGCCTTTCACGAACTCTTCTAGGTGGTCATGATAGTATCTTCTTTGATTGGCGAACGCGATGTAAAATAGGTGTTGGGGTTGCACGCGGGCTTGCCTTTCTGCACGAAGAAGTCAGGCCTCTTATCATTCATAGGGATATTAAAGCAAGCAATATTCTCCTTGACAAAGACCTTACACCCAAGATATCCGATTTCGGTCTTGCAAAGCTATTGCCAGCAAATGCGACTCATGTCAGCACACGCGTAGCAGGAACACTAGGTTATTTGGCACCAGAGTACGCGATAGGAGGGAGACTTACACGAAAAGCCGACATCTACAGTTTTGGTGTCCTCCTTATTGAGATAGTCAGTGGGAGATGCAACACGAATACGCGACTTCCAGTAGAAGAACAATTCATTCTAGAGAGGACATGGGAACTTTACGAGCGAAAGGAATTAGTTGCGCTGGTAGATACATCCCTAAACGGGGAATTCGACGCCGGGCAGGCCTGTAAGTTTCTGAAGATTGGTCTTCTTTGCACTCAGGAATCTCCGAAGTGTCGGCCATCCATGTCTACCGTGGTCAAGATGCTTACAGGAGAGATGGAAGTTGATGACAGTAAGATGACAAAACCTGCCTTAATTTCTGATTTTATGGACCTCAAAGTTAGACATAAACAAGAAAGTATAATCGATACGAGGACTTTATCTTCATATGATACATCGTCCGCTTCGGAGCATCAGGAGGACACTACCATTATATCAGCTGCAACTTCTACCTTCACTACACAACATGATCACAGCATGTAA 1179 0.419 MTCFPFSFSKKSSSSLPSARQNLDNDEDDISSIQNVKIYSYKELRNATDNFSVANKIGEGGFGSVYMGRLKGGILAAIKVLSAESKQGVKEFLTEINMISEIEHENLVKLYGCCVEKNNRILVYNYLENNSLSRTLLGGHDSIFFDWRTRCKIGVGVARGLAFLHEEVRPLIIHRDIKASNILLDKDLTPKISDFGLAKLLPANATHVSTRVAGTLGYLAPEYAIGGRLTRKADIYSFGVLLIEIVSGRCNTNTRLPVEEQFILERTWELYERKELVALVDTSLNGEFDAGQACKFLKIGLLCTQESPKCRPSMSTVVKMLTGEMEVDDSKMTKPALISDFMDLKVRHKQESIIDTRTLSSYDTSSASEHQEDTTIISAATSTFTTQHDHSM 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02989 392 Gene3D Transferase(Phosphotransferase) domain 1 127 338 - -
Trre11g02989 392 ProSitePatterns Protein kinases ATP-binding region signature. 57 79 IPR017441 GO:0005524
Trre11g02989 392 MobiDBLite consensus disorder prediction 1 23 - -
Trre11g02989 392 SMART serkin_6 51 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02989 392 MobiDBLite consensus disorder prediction 1 21 - -
Trre11g02989 392 FunFam cold-responsive protein kinase 1 127 337 - -
Trre11g02989 392 Gene3D Phosphorylase Kinase; domain 1 21 126 - -
Trre11g02989 392 FunFam cold-responsive protein kinase 1 21 126 - -
Trre11g02989 392 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 34 363 - -
Trre11g02989 392 ProSiteProfiles Protein kinase domain profile. 51 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02989 392 CDD STKc_IRAK 57 323 - -
Trre11g02989 392 Pfam Protein tyrosine and serine/threonine kinase 53 321 IPR001245 GO:0004672|GO:0006468
Trre11g02989 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Trre11g02989 392 SUPERFAMILY Protein kinase-like (PK-like) 28 321 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02989 Trre-Chr11 40018637 40020705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02989 39 324 Receptor kinase-like Gene Family AT1G07650 56.597 2.31e-106 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre11g02989 PK_Tyr_Ser-Thr 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02989 - - gmx:100782320 584.334