Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02981 ATGCTGATATTAGTTGGAAATTTGCAAGGAACAATGAGTTATCTTGCTTCACCAGTGAGTTTAGGTAGTTTCAATGGTGTGAGTAGTTCAACTAGAATGTCACATTCTGTTGTTAGAAGAATTTCTGTTTCAAGAGGGAATTGTAATAAAGGTAAAAAAAGATGGCATTGTGTTTCTTTGTCTGTTTGTAGATATTCAGTTACTACAACTGATTTTGTTGCTAACCAAGGGAATTCAGTTTCTCTTGATTCTACTAACATTGATGATGATAATAAAGGTGGTGATAGTGGTGGTGTTGGTGGTAGTTTTGTTCTTAAACCTCCTCCTAAGCCTGTTTTGAAGTCCTCTAGTAGTAATGATGTCGATGAGAGGACTAAGGTGATTGAATCACTTGGAGAGGTTTTGGAGAAGGCTGAAAAGCTTGAAAATCCTAAGTTGGATGGTGAAAGAAGTAATGGTTCGGTAAGTAAACCGGCAAGACCGGAGACAAATGTTAAAGCAGAGATAAATGTTAAACCTAAGGATGATAATGCGGTAAATTCGTTACAAAAACATAAGTCTAAGACATTGAAGAGTATATGGCGTAAAGGGGATTCGGTTGCAACTGTGAAGAGGGTTGTGAAGGAAGAACCTAAGCCTAGTATCAAGAGAAGTGAAGTGAGGGAATCACAGATAGTGGGAGGGGAGAAGGTAACATCTCGGTCTAGTGATCCTCAGCCTCCTTCGAGACCTCAACCGACATTACTGTCTAGGCCTTCTATAGCCCCGCCGCCCCCACCACCCCCGCCACTTGTTAAAAAGCCTGTTATCTTGAAGGATGATAGAGGGCAAGGTGAAACACCTGTTACGCCTAAAGAAAGGAAGGGACCTATCTTGATTGATAAGTTTGCTTCAAAGAAACCGGAAGTTGATCCTGTGATTGCTCAATCTGTTATGGCTCCTTCGAAACCAGGGAAGGCTCCTCCCCAAGGAAGGTTTAAAGATGATTACCGGAGGAAATCAGGGGCAGGAGGACCAAGAAGACGAATGGTGGTGAATGATGATGATAGTTCCGGTGCTACAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGTAGGGCGGTACGACTTCAGGCTGCCAGGGAAGCTGCTCCTGTTAAAGTTGAAATTCTAGAGGTCAGTGACAAAGGTATGCTGGTGGAGGAGTTGGCATACAATTTGGCGACCACTGAAGGTGAAATCCTCGGTTCTTTGTACTCCAAAGGAATTAAACCAGACGGGGTGCAAACTCTAGACAAGGATATGGTGAAGATGATATGTAAAGAATATGAAGTGGAAGTCATCGATGCCGATCCTTTCAAAGTTGAAGGATTAGTGAATAGAAGGGAAATTCTCGAGGAAGATGACCTTGACAAACTCAAAGACAGACCTCCTGTTATTACTATCATGGGCCATGTAGATCACGGCAAAACAACTCTGTTGGATCATATAAGGAAGACCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAAGGAATTGGGGCTTATAAAGTGCAAGTACCTGTTGATGGAAAAACGTTGCCGTGTGTTTTTCTCGACACTCCTGGGCACGAGGCGTTTGGGGCAATGAGAGCTCGTGGAGCAAGCGTAACAGACATTGCTATTATTGTTGTGGCTGCTGATGATGGTATTCGTCCTCAAACAAGTGAAGCTATAGCTCATGCCAAAGCAGCAGGAGTACCGATGATAATTGCTATAAACAAGATAGATAAAGATGGAGCAAATCCAGATCGAGTTATGCAAGAGCTTTCTTCAATTGGTCTGATGCCAGAAGACTGGGGTGGTGACGTCCCGATGGTTCAGATAAGTGCTCTTCAAGGGCAGAATGTAGACGATCTTTTGGAAACAGTTATGCTTGTTGCCGAGTTGCAAGAACTGAAAGCTAATCCTGATAGAAGTGCAAAGGGAACAGTCATTGAGGCAGGCTTGGATAAATCAAAAGGACCATTTGCTACATTTATTGTGCAGAATGGAACACTTAGAAGGGGTGATATAGTAGTTTGTGGAGGATCTTTTGGAAAGGTACGAGCTTTATTCGATGATAGTGGAAAGCGTGTTGATGAAGCTACACCTTCTATACCTGTACAGGTTATTGGATTGAATAATGTTCCAGTTGCTGGTGATGTATTTGAGGTTGTTGAGTCCCTTGATACTGCGCGTGAAAAGGCAGAGTCCCGTGTTATGTCATTGCGAGATGAGCGTATTTCAGCAAAGGCAGGAGATGGCAAGGTCACCCTTTCTTCGTTAGCTTCTGCAGTTTCATCAGGAAAGCTTTCCGGATTAGACTTGCACCAATTGAATGTTATTTTGAAGGTTGATCTTCAGGGATCCATTGAAGCAGTCAAACAAGCCCTGCAGGTGCTACCACAAGATAATGTCACACTGAAGTTTTTGATGGAAACCACAGGCGATGTAAGCACAAGTGACGTTGACCTTGCGTATGCAAGCAAAGCCATAATTTTTGGATTTAATGTCAAAGCACCAGGCTCTGTGAAAAGCTATGCAGATAATAAAGCCGTTGAGATAAGATTATATAAAGTTATTTATGAATTAATTGATGATGTACGGCAAGCAATGGAAGGGCTCTTGGATTCTGTTGAGGAACAAGTACCAATTGGCTCAGCAGAAATACGGGCCGTATTCAGCAGTCGTAGTAGTCGTGTTGCTGGATGTATGGTTACAGAAGGAAAGGTTACAAAAGGCTGTGGTATTCGAGTCGTTCGGAAGGGAAAAGTAGTACATGTTGGTATTCTTGATTCGTTGAAACGGGTGAAAGAAGTTGTTAAAGAGGTAAATGCCGGTCTTGAGTGTGGAATTGCGTTAGAAGACTATGATGATTGGGAAGAGGGTGATATTCTTGAAGCCTTCAACACAATTGAGAAGAGAAGAACCCTTGAAGAAGCCTCAATATCAATGGCAGCCGCTGTGGAAGGAGTAGGATCTTAA 2988 0.428 MLILVGNLQGTMSYLASPVSLGSFNGVSSSTRMSHSVVRRISVSRGNCNKGKKRWHCVSLSVCRYSVTTTDFVANQGNSVSLDSTNIDDDNKGGDSGGVGGSFVLKPPPKPVLKSSSSNDVDERTKVIESLGEVLEKAEKLENPKLDGERSNGSVSKPARPETNVKAEINVKPKDDNAVNSLQKHKSKTLKSIWRKGDSVATVKRVVKEEPKPSIKRSEVRESQIVGGEKVTSRSSDPQPPSRPQPTLLSRPSIAPPPPPPPPLVKKPVILKDDRGQGETPVTPKERKGPILIDKFASKKPEVDPVIAQSVMAPSKPGKAPPQGRFKDDYRRKSGAGGPRRRMVVNDDDSSGATRKGRKWSKASRRAVRLQAAREAAPVKVEILEVSDKGMLVEELAYNLATTEGEILGSLYSKGIKPDGVQTLDKDMVKMICKEYEVEVIDADPFKVEGLVNRREILEEDDLDKLKDRPPVITIMGHVDHGKTTLLDHIRKTKVAASEAGGITQGIGAYKVQVPVDGKTLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTSEAIAHAKAAGVPMIIAINKIDKDGANPDRVMQELSSIGLMPEDWGGDVPMVQISALQGQNVDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLRRGDIVVCGGSFGKVRALFDDSGKRVDEATPSIPVQVIGLNNVPVAGDVFEVVESLDTAREKAESRVMSLRDERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNVILKVDLQGSIEAVKQALQVLPQDNVTLKFLMETTGDVSTSDVDLAYASKAIIFGFNVKAPGSVKSYADNKAVEIRLYKVIYELIDDVRQAMEGLLDSVEEQVPIGSAEIRAVFSSRSSRVAGCMVTEGKVTKGCGIRVVRKGKVVHVGILDSLKRVKEVVKEVNAGLECGIALEDYDDWEEGDILEAFNTIEKRRTLEEASISMAAAVEGVGS 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02981 995 FunFam Translation initiation factor IF-2 881 978 - -
Trre11g02981 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 644 IPR027417 -
Trre11g02981 995 CDD IF2_mtIF2_II 648 740 IPR044145 -
Trre11g02981 995 MobiDBLite consensus disorder prediction 139 291 - -
Trre11g02981 995 CDD mtIF2_IVc 887 969 - -
Trre11g02981 995 MobiDBLite consensus disorder prediction 201 224 - -
Trre11g02981 995 Pfam Elongation factor Tu GTP binding domain 473 633 IPR000795 GO:0003924|GO:0005525
Trre11g02981 995 MobiDBLite consensus disorder prediction 309 363 - -
Trre11g02981 995 MobiDBLite consensus disorder prediction 268 291 - -
Trre11g02981 995 NCBIfam small GTP-binding protein domain 470 631 IPR005225 GO:0005525
Trre11g02981 995 FunFam Translation initiation factor IF-2 776 880 - -
Trre11g02981 995 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 775 887 IPR036925 -
Trre11g02981 995 Gene3D - 776 880 IPR036925 -
Trre11g02981 995 FunFam Translation initiation factor IF-2 465 643 - -
Trre11g02981 995 ProSitePatterns Initiation factor 2 signature. 930 952 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Trre11g02981 995 SUPERFAMILY Translation proteins 883 977 IPR009000 -
Trre11g02981 995 Gene3D Translation factors 644 760 - -
Trre11g02981 995 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 468 641 IPR000795 GO:0003924|GO:0005525
Trre11g02981 995 PRINTS GTP-binding elongation factor signature 524 534 IPR000795 GO:0003924|GO:0005525
Trre11g02981 995 PRINTS GTP-binding elongation factor signature 472 485 IPR000795 GO:0003924|GO:0005525
Trre11g02981 995 PRINTS GTP-binding elongation factor signature 540 551 IPR000795 GO:0003924|GO:0005525
Trre11g02981 995 PRINTS GTP-binding elongation factor signature 576 585 IPR000795 GO:0003924|GO:0005525
Trre11g02981 995 Hamap Translation initiation factor IF-2 [infB]. 7 977 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Trre11g02981 995 SUPERFAMILY Translation proteins 644 728 IPR009000 -
Trre11g02981 995 Gene3D Translation factors 881 978 - -
Trre11g02981 995 CDD IF2_eIF5B 471 637 - -
Trre11g02981 995 Gene3D - 465 643 IPR027417 -
Trre11g02981 995 MobiDBLite consensus disorder prediction 167 182 - -
Trre11g02981 995 Pfam Translation-initiation factor 2 776 869 IPR023115 -
Trre11g02981 995 MobiDBLite consensus disorder prediction 78 124 - -
Trre11g02981 995 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 175 979 IPR015760 -
Trre11g02981 995 Coils Coil 727 747 - -
Trre11g02981 995 MobiDBLite consensus disorder prediction 322 356 - -
Trre11g02981 995 MobiDBLite consensus disorder prediction 239 267 - -
Trre11g02981 995 NCBIfam translation initiation factor IF-2 389 979 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Trre11g02981 995 FunFam Translation initiation factor IF-2 644 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02981 Trre-Chr11 39919360 39925354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02981 469 929 Eukaryotic Initiation Factors Gene Family AT1G21160 26.374 3.01e-29 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02981 K02519 - gmx:100778924 1434.47