Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g02981 | ATGCTGATATTAGTTGGAAATTTGCAAGGAACAATGAGTTATCTTGCTTCACCAGTGAGTTTAGGTAGTTTCAATGGTGTGAGTAGTTCAACTAGAATGTCACATTCTGTTGTTAGAAGAATTTCTGTTTCAAGAGGGAATTGTAATAAAGGTAAAAAAAGATGGCATTGTGTTTCTTTGTCTGTTTGTAGATATTCAGTTACTACAACTGATTTTGTTGCTAACCAAGGGAATTCAGTTTCTCTTGATTCTACTAACATTGATGATGATAATAAAGGTGGTGATAGTGGTGGTGTTGGTGGTAGTTTTGTTCTTAAACCTCCTCCTAAGCCTGTTTTGAAGTCCTCTAGTAGTAATGATGTCGATGAGAGGACTAAGGTGATTGAATCACTTGGAGAGGTTTTGGAGAAGGCTGAAAAGCTTGAAAATCCTAAGTTGGATGGTGAAAGAAGTAATGGTTCGGTAAGTAAACCGGCAAGACCGGAGACAAATGTTAAAGCAGAGATAAATGTTAAACCTAAGGATGATAATGCGGTAAATTCGTTACAAAAACATAAGTCTAAGACATTGAAGAGTATATGGCGTAAAGGGGATTCGGTTGCAACTGTGAAGAGGGTTGTGAAGGAAGAACCTAAGCCTAGTATCAAGAGAAGTGAAGTGAGGGAATCACAGATAGTGGGAGGGGAGAAGGTAACATCTCGGTCTAGTGATCCTCAGCCTCCTTCGAGACCTCAACCGACATTACTGTCTAGGCCTTCTATAGCCCCGCCGCCCCCACCACCCCCGCCACTTGTTAAAAAGCCTGTTATCTTGAAGGATGATAGAGGGCAAGGTGAAACACCTGTTACGCCTAAAGAAAGGAAGGGACCTATCTTGATTGATAAGTTTGCTTCAAAGAAACCGGAAGTTGATCCTGTGATTGCTCAATCTGTTATGGCTCCTTCGAAACCAGGGAAGGCTCCTCCCCAAGGAAGGTTTAAAGATGATTACCGGAGGAAATCAGGGGCAGGAGGACCAAGAAGACGAATGGTGGTGAATGATGATGATAGTTCCGGTGCTACAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGTAGGGCGGTACGACTTCAGGCTGCCAGGGAAGCTGCTCCTGTTAAAGTTGAAATTCTAGAGGTCAGTGACAAAGGTATGCTGGTGGAGGAGTTGGCATACAATTTGGCGACCACTGAAGGTGAAATCCTCGGTTCTTTGTACTCCAAAGGAATTAAACCAGACGGGGTGCAAACTCTAGACAAGGATATGGTGAAGATGATATGTAAAGAATATGAAGTGGAAGTCATCGATGCCGATCCTTTCAAAGTTGAAGGATTAGTGAATAGAAGGGAAATTCTCGAGGAAGATGACCTTGACAAACTCAAAGACAGACCTCCTGTTATTACTATCATGGGCCATGTAGATCACGGCAAAACAACTCTGTTGGATCATATAAGGAAGACCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAAGGAATTGGGGCTTATAAAGTGCAAGTACCTGTTGATGGAAAAACGTTGCCGTGTGTTTTTCTCGACACTCCTGGGCACGAGGCGTTTGGGGCAATGAGAGCTCGTGGAGCAAGCGTAACAGACATTGCTATTATTGTTGTGGCTGCTGATGATGGTATTCGTCCTCAAACAAGTGAAGCTATAGCTCATGCCAAAGCAGCAGGAGTACCGATGATAATTGCTATAAACAAGATAGATAAAGATGGAGCAAATCCAGATCGAGTTATGCAAGAGCTTTCTTCAATTGGTCTGATGCCAGAAGACTGGGGTGGTGACGTCCCGATGGTTCAGATAAGTGCTCTTCAAGGGCAGAATGTAGACGATCTTTTGGAAACAGTTATGCTTGTTGCCGAGTTGCAAGAACTGAAAGCTAATCCTGATAGAAGTGCAAAGGGAACAGTCATTGAGGCAGGCTTGGATAAATCAAAAGGACCATTTGCTACATTTATTGTGCAGAATGGAACACTTAGAAGGGGTGATATAGTAGTTTGTGGAGGATCTTTTGGAAAGGTACGAGCTTTATTCGATGATAGTGGAAAGCGTGTTGATGAAGCTACACCTTCTATACCTGTACAGGTTATTGGATTGAATAATGTTCCAGTTGCTGGTGATGTATTTGAGGTTGTTGAGTCCCTTGATACTGCGCGTGAAAAGGCAGAGTCCCGTGTTATGTCATTGCGAGATGAGCGTATTTCAGCAAAGGCAGGAGATGGCAAGGTCACCCTTTCTTCGTTAGCTTCTGCAGTTTCATCAGGAAAGCTTTCCGGATTAGACTTGCACCAATTGAATGTTATTTTGAAGGTTGATCTTCAGGGATCCATTGAAGCAGTCAAACAAGCCCTGCAGGTGCTACCACAAGATAATGTCACACTGAAGTTTTTGATGGAAACCACAGGCGATGTAAGCACAAGTGACGTTGACCTTGCGTATGCAAGCAAAGCCATAATTTTTGGATTTAATGTCAAAGCACCAGGCTCTGTGAAAAGCTATGCAGATAATAAAGCCGTTGAGATAAGATTATATAAAGTTATTTATGAATTAATTGATGATGTACGGCAAGCAATGGAAGGGCTCTTGGATTCTGTTGAGGAACAAGTACCAATTGGCTCAGCAGAAATACGGGCCGTATTCAGCAGTCGTAGTAGTCGTGTTGCTGGATGTATGGTTACAGAAGGAAAGGTTACAAAAGGCTGTGGTATTCGAGTCGTTCGGAAGGGAAAAGTAGTACATGTTGGTATTCTTGATTCGTTGAAACGGGTGAAAGAAGTTGTTAAAGAGGTAAATGCCGGTCTTGAGTGTGGAATTGCGTTAGAAGACTATGATGATTGGGAAGAGGGTGATATTCTTGAAGCCTTCAACACAATTGAGAAGAGAAGAACCCTTGAAGAAGCCTCAATATCAATGGCAGCCGCTGTGGAAGGAGTAGGATCTTAA | 2988 | 0.428 | MLILVGNLQGTMSYLASPVSLGSFNGVSSSTRMSHSVVRRISVSRGNCNKGKKRWHCVSLSVCRYSVTTTDFVANQGNSVSLDSTNIDDDNKGGDSGGVGGSFVLKPPPKPVLKSSSSNDVDERTKVIESLGEVLEKAEKLENPKLDGERSNGSVSKPARPETNVKAEINVKPKDDNAVNSLQKHKSKTLKSIWRKGDSVATVKRVVKEEPKPSIKRSEVRESQIVGGEKVTSRSSDPQPPSRPQPTLLSRPSIAPPPPPPPPLVKKPVILKDDRGQGETPVTPKERKGPILIDKFASKKPEVDPVIAQSVMAPSKPGKAPPQGRFKDDYRRKSGAGGPRRRMVVNDDDSSGATRKGRKWSKASRRAVRLQAAREAAPVKVEILEVSDKGMLVEELAYNLATTEGEILGSLYSKGIKPDGVQTLDKDMVKMICKEYEVEVIDADPFKVEGLVNRREILEEDDLDKLKDRPPVITIMGHVDHGKTTLLDHIRKTKVAASEAGGITQGIGAYKVQVPVDGKTLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTSEAIAHAKAAGVPMIIAINKIDKDGANPDRVMQELSSIGLMPEDWGGDVPMVQISALQGQNVDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLRRGDIVVCGGSFGKVRALFDDSGKRVDEATPSIPVQVIGLNNVPVAGDVFEVVESLDTAREKAESRVMSLRDERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNVILKVDLQGSIEAVKQALQVLPQDNVTLKFLMETTGDVSTSDVDLAYASKAIIFGFNVKAPGSVKSYADNKAVEIRLYKVIYELIDDVRQAMEGLLDSVEEQVPIGSAEIRAVFSSRSSRVAGCMVTEGKVTKGCGIRVVRKGKVVHVGILDSLKRVKEVVKEVNAGLECGIALEDYDDWEEGDILEAFNTIEKRRTLEEASISMAAAVEGVGS | 995 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g02981 | 995 | FunFam | Translation initiation factor IF-2 | 881 | 978 | - | - | |
Trre11g02981 | 995 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 460 | 644 | IPR027417 | - | |
Trre11g02981 | 995 | CDD | IF2_mtIF2_II | 648 | 740 | IPR044145 | - | |
Trre11g02981 | 995 | MobiDBLite | consensus disorder prediction | 139 | 291 | - | - | |
Trre11g02981 | 995 | CDD | mtIF2_IVc | 887 | 969 | - | - | |
Trre11g02981 | 995 | MobiDBLite | consensus disorder prediction | 201 | 224 | - | - | |
Trre11g02981 | 995 | Pfam | Elongation factor Tu GTP binding domain | 473 | 633 | IPR000795 | GO:0003924|GO:0005525 | |
Trre11g02981 | 995 | MobiDBLite | consensus disorder prediction | 309 | 363 | - | - | |
Trre11g02981 | 995 | MobiDBLite | consensus disorder prediction | 268 | 291 | - | - | |
Trre11g02981 | 995 | NCBIfam | small GTP-binding protein domain | 470 | 631 | IPR005225 | GO:0005525 | |
Trre11g02981 | 995 | FunFam | Translation initiation factor IF-2 | 776 | 880 | - | - | |
Trre11g02981 | 995 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 775 | 887 | IPR036925 | - | |
Trre11g02981 | 995 | Gene3D | - | 776 | 880 | IPR036925 | - | |
Trre11g02981 | 995 | FunFam | Translation initiation factor IF-2 | 465 | 643 | - | - | |
Trre11g02981 | 995 | ProSitePatterns | Initiation factor 2 signature. | 930 | 952 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Trre11g02981 | 995 | SUPERFAMILY | Translation proteins | 883 | 977 | IPR009000 | - | |
Trre11g02981 | 995 | Gene3D | Translation factors | 644 | 760 | - | - | |
Trre11g02981 | 995 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 468 | 641 | IPR000795 | GO:0003924|GO:0005525 | |
Trre11g02981 | 995 | PRINTS | GTP-binding elongation factor signature | 524 | 534 | IPR000795 | GO:0003924|GO:0005525 | |
Trre11g02981 | 995 | PRINTS | GTP-binding elongation factor signature | 472 | 485 | IPR000795 | GO:0003924|GO:0005525 | |
Trre11g02981 | 995 | PRINTS | GTP-binding elongation factor signature | 540 | 551 | IPR000795 | GO:0003924|GO:0005525 | |
Trre11g02981 | 995 | PRINTS | GTP-binding elongation factor signature | 576 | 585 | IPR000795 | GO:0003924|GO:0005525 | |
Trre11g02981 | 995 | Hamap | Translation initiation factor IF-2 [infB]. | 7 | 977 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Trre11g02981 | 995 | SUPERFAMILY | Translation proteins | 644 | 728 | IPR009000 | - | |
Trre11g02981 | 995 | Gene3D | Translation factors | 881 | 978 | - | - | |
Trre11g02981 | 995 | CDD | IF2_eIF5B | 471 | 637 | - | - | |
Trre11g02981 | 995 | Gene3D | - | 465 | 643 | IPR027417 | - | |
Trre11g02981 | 995 | MobiDBLite | consensus disorder prediction | 167 | 182 | - | - | |
Trre11g02981 | 995 | Pfam | Translation-initiation factor 2 | 776 | 869 | IPR023115 | - | |
Trre11g02981 | 995 | MobiDBLite | consensus disorder prediction | 78 | 124 | - | - | |
Trre11g02981 | 995 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 175 | 979 | IPR015760 | - | |
Trre11g02981 | 995 | Coils | Coil | 727 | 747 | - | - | |
Trre11g02981 | 995 | MobiDBLite | consensus disorder prediction | 322 | 356 | - | - | |
Trre11g02981 | 995 | MobiDBLite | consensus disorder prediction | 239 | 267 | - | - | |
Trre11g02981 | 995 | NCBIfam | translation initiation factor IF-2 | 389 | 979 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Trre11g02981 | 995 | FunFam | Translation initiation factor IF-2 | 644 | 762 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g02981 | Trre-Chr11 | 39919360 | 39925354 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g02981 | 469 | 929 | Eukaryotic Initiation Factors Gene Family | AT1G21160 | 26.374 | 3.01e-29 | 124 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g02981 | K02519 | - | gmx:100778924 | 1434.47 |