Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02978 ATGAAAAGCAAAGTCAGTGGTCTTTGTTTGATGGACTACAGTCATGATGAATATGAAGCAGCTGATGGTCTTGTTTTATTGCAAACATTGTTCGAAAAGAAGAAGCCCGTTAGAAAACTGAAAATTACTTTTGAAGGCAAAAGAATTTGTGAACAAACCTACAACAATGTTCGTTCGGTCGTTTCAAATAACAAGGTTAGTTCATCGCCACAAATCATTGTTCCTAATGTTGTTATGGGATATGAAGACAACCCTCCAAATATACCAACGATTCCTGGTGTGGCGAACAATAATATTCTTGGATGTTGCAAACCTTTTGAGAAGAAATTATCAACGAGTGATTTGAAGGTGGATTTAAACAGATTGTTTTTGGACAAGGGCCATGTGAAAAAATATTTTTTACCCTTGTTGAAAGAAGACGAAGATGTTGAAGAAGGAATAGATGTCGTTGTGTATGACATGCAAGGCAAAACGTTCAACATGAAGTTCAAGTTTTGGAGCGGAAAATTTTATGTTCTCAATGGAGGGTGGAAGACTTTCTTCAAATCACATTCTTTGCGAGCAAATCATGATCATGTTATAGTGTGGATGTTTCGCCATTCTGAAACCGGTAATTTGTGTTTTGCTCTTAGTGTGAAAAGAGCGTAG 648 0.3673 MKSKVSGLCLMDYSHDEYEAADGLVLLQTLFEKKKPVRKLKITFEGKRICEQTYNNVRSVVSNNKVSSSPQIIVPNVVMGYEDNPPNIPTIPGVANNNILGCCKPFEKKLSTSDLKVDLNRLFLDKGHVKKYFLPLLKEDEDVEEGIDVVVYDMQGKTFNMKFKFWSGKFYVLNGGWKTFFKSHSLRANHDHVIVWMFRHSETGNLCFALSVKRA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02978 215 SUPERFAMILY DNA-binding pseudobarrel domain 106 208 IPR015300 -
Trre11g02978 215 ProSiteProfiles B3 DNA-binding domain profile. 107 214 IPR003340 GO:0003677
Trre11g02978 215 Pfam B3 DNA binding domain 106 207 IPR003340 GO:0003677
Trre11g02978 215 Gene3D - 102 215 IPR015300 -
Trre11g02978 215 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 89 213 IPR005508 GO:0003677
Trre11g02978 215 CDD B3_DNA 106 208 IPR003340 GO:0003677
Trre11g02978 215 SMART B3_2 106 214 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02978 Trre-Chr11 39888319 39888966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02978 103 210 B3 DNA Binding Superfamily AT4G03170 44.954 5.04e-24 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre11g02978 B3 6.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02978 - - tpra:123915381 339.347