Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02977 ATGAAAGCAAAAGTCAATAAAGATGACTTCACCCCTGAAGAACTTGAAATAGCTTCAACTTTTCTTTTATTGGAAACGCCATTCATAATGGAGGAGACTCCAAAATTGGAAATAACTCTTGGCAGCAAACCGATCCATGAAACAACCGATAACAACAATGTTGATTTAATGCCACAACAAATCAATATCCCCCCCAACGATGTTGCTGATAATAAATACTACCCTCCAGATATACCAACGATTTCCGGCGTTCCAAACAATAATATTGTTGGTTGTTGCAAGCCTTTTGAGAAGAAACTATATCCTAGTGATTTAAATGAGAATCTCAATAGATTGATGATGAACACTAAACATGTGATAGAATATTTCTTGCCCTTGTTGAGAGAAGGAGAAAAAGCCGAAGATGGAATAAATGTCGTTGCCTATGACATGCAAGGCAAAACGTTCAATATGACGTTCAAATCCGTCCCTGATTATATCCTTAATGGAGAGTGGAAGACTTTCTTCAAAACACGTAACTTGAAAGCAAATCGAGATCATTATATTACAGTTTGGATGTTTCGTCATTCAGAAACTAATAGCTTATGTTTTGCTCTTAGTGTCAGAACCGAACAAATAAAAAAGGAGGATGTGATTAGAGGGAAGAAAAAAGGGAAGTCATACAATGTTGGAAACTTGGGTGCAAATTACATGAAAGGAACAAGAACTCTTAATTTGAGAGTAGCAGATGGTGAAGGGACATCACGTCCAGCAGAGTTGACGCATGAAATGCATGAATTGATACAGGAAATGGCGCAAGATAAGGCTCTTATGCAACATGTTCTTCCAAGACAACAAACCTTAGATGACAAGTTGGAGCATGAACCCACTGCAGACCCCAATATTGATGATCCATATGAATTAGTTTTTGGTAAAGAGGAGGAAGAGAAAGAGAAAGATGAGAATTTTGATGATGAGTGA 960 0.374 MKAKVNKDDFTPEELEIASTFLLLETPFIMEETPKLEITLGSKPIHETTDNNNVDLMPQQINIPPNDVADNKYYPPDIPTISGVPNNNIVGCCKPFEKKLYPSDLNENLNRLMMNTKHVIEYFLPLLREGEKAEDGINVVAYDMQGKTFNMTFKSVPDYILNGEWKTFFKTRNLKANRDHYITVWMFRHSETNSLCFALSVRTEQIKKEDVIRGKKKGKSYNVGNLGANYMKGTRTLNLRVADGEGTSRPAELTHEMHELIQEMAQDKALMQHVLPRQQTLDDKLEHEPTADPNIDDPYELVFGKEEEEKEKDENFDDE 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02977 319 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 91 202 IPR005508 GO:0003677
Trre11g02977 319 Gene3D - 91 214 IPR015300 -
Trre11g02977 319 CDD B3_DNA 96 202 IPR003340 GO:0003677
Trre11g02977 319 MobiDBLite consensus disorder prediction 280 319 - -
Trre11g02977 319 SUPERFAMILY DNA-binding pseudobarrel domain 96 197 IPR015300 -
Trre11g02977 319 MobiDBLite consensus disorder prediction 280 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02977 Trre-Chr11 39881723 39884240 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02977 94 199 B3 DNA Binding Superfamily AT4G03170 36.937 1.52e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02977 - - tpra:123915381 194.512