Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02974 ATGTTGGAGCTTCCGGAATGGACAGATATTGTGAAGACTGCAAAGTTTAAGGAGTTGGCTCCTTATGATCCTGACTGGTACTATATCAGAGCTGCTTCCATGGCAAGGAAGATATACATTAGGGGAGGACTCGGTGTTGGTGCTTTCCAGAGGATTTATGGTGGAAGCCAGAGGAACGGTAGTCGTCCACCTCATTTCTGCAAGAGCAGTGGTGCTATTGCTCGTCACATTCTTCAGCAATTGCAGAACGTGAATATCATTGAGATGGACACCAAGGGTGGCAGGAAAATCACTTCCAATGGAAGGAGGGATTTGGACCAAGTTGTCGGACAGATTGTGGTTGCTCCTTGA 351 0.4701 MLELPEWTDIVKTAKFKELAPYDPDWYYIRAASMARKIYIRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQNVNIIEMDTKGGRKITSNGRRDLDQVVGQIVVAP 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02974 116 Pfam Ribosomal protein S19e 2 113 IPR001266 GO:0003735|GO:0005840|GO:0006412
Trre11g02974 116 Gene3D - 1 115 IPR036388 -
Trre11g02974 116 ProSitePatterns Ribosomal protein S19e signature. 63 82 IPR018277 GO:0003735|GO:0005840|GO:0006412
Trre11g02974 116 SUPERFAMILY "Winged helix" DNA-binding domain 2 114 IPR036390 -
Trre11g02974 116 PANTHER 40S RIBOSOMAL PROTEIN S19 2 111 IPR001266 GO:0003735|GO:0005840|GO:0006412
Trre11g02974 116 SMART Ribosomal_S19e_2 1 115 IPR001266 GO:0003735|GO:0005840|GO:0006412
Trre11g02974 116 FunFam 40S ribosomal protein S19 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02974 Trre-Chr11 39856721 39857750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02974 2 116 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 81.739 3.05e-72 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02974 K02966 - gmx:100499800 225.328